View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_3 (Length: 450)
Name: NF1603_low_3
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 51124032 - 51123601
Alignment:
| Q |
8 |
gacatcatcaattgagttagatcttacgtattaaaatccgttaatttagtccccaaagtataaaaatacgcacttggagatattggtaatggcgttaggc |
107 |
Q |
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| T |
51124032 |
gacatcatcaattgagttagatcttatgtattaaaatccgtcaatttaatccctaaagtataaaaatacgcacttggagatattggtaatggcattaggc |
51123933 |
T |
|
| Q |
108 |
tctaatacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccg |
207 |
Q |
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| T |
51123932 |
tctaatacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccg |
51123833 |
T |
|
| Q |
208 |
aaaatttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51123832 |
aaaatttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagc |
51123733 |
T |
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| Q |
308 |
tattccataagttgcatcaacattccatcaaaacctcaaccctttgtgtatgcgctcagtagtagttaaacatgaggcatatatagcaaatatgcagtgc |
407 |
Q |
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| T |
51123732 |
tattccataagttgcatcaacattccatcaaaacctcaaccctttgtgtatgcgctcagtagtagttaaacatgaggtatgtatagcaaatatgcagtgc |
51123633 |
T |
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| Q |
408 |
attgctttggttgatttcaattgctaggtaaa |
439 |
Q |
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| T |
51123632 |
attgctttggttgatttcaattgctaggtaaa |
51123601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 32149981 - 32150139
Alignment:
| Q |
92 |
ggtaatggcgttaggctctaatacaaatacatg---ttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaa |
188 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32149981 |
ggtaatggcattaggctctaatacaaatacatgctattgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagcccaa |
32150080 |
T |
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| Q |
189 |
gtggtatatataaccaccgaaaatttcttaacatatatagaacagaaccaaacaattcttctt |
251 |
Q |
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|||| |||||||||||| |||| ||||| |||||||||| ||||||||||||||||| |
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| T |
32150081 |
gtgg--tatataaccaccaaaaaaaatttaac--atatagaacaagaccaaacaattcttctt |
32150139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 32150143 - 32150190
Alignment:
| Q |
294 |
catagcctaacagctattccataagttgcatcaacattccatcaaaac |
341 |
Q |
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| T |
32150143 |
catagcctaacatctcttccataagttgcatcaacattccatcaaaac |
32150190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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