View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_5 (Length: 330)
Name: NF1603_low_5
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 32883434 - 32883106
Alignment:
| Q |
1 |
ttgtcctattggtaacaaccatccaaaggttatttggtgccaagcattttcagagtgagttttcttgaggtgccaattggaaattaaattaccatagtta |
100 |
Q |
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| T |
32883434 |
ttgtcctattggtaacaaccatccaaaggttatttggtgccaagcattttcagagtgagttttcttgaggtgccaattggaagttaaattaccatagtta |
32883335 |
T |
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| Q |
101 |
taccacttagtctatgtcttatatcatggtggatataccgctgtaattctgacatattcatcgtgatattaaaaatgcacttaaaaaatatactaattg- |
199 |
Q |
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| T |
32883334 |
taccacttagtctatgtcttatatcatgatgaatataccgctttaattctgacatattcatcgtgatattaaaaatgcacttaaaaaatatactaattgc |
32883235 |
T |
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| Q |
200 |
------------acacat----aaatcatgatgacacatagtaattctgataaacttcttgcgaattcaaattagcatgttgcaagacacataatccttc |
283 |
Q |
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| T |
32883234 |
atgtttagaatcaaacttaataaaatcatgatgacacatagtaattctgataaacttcttgcgaattcaaattagcatgttgcaagacacataatccttc |
32883135 |
T |
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| Q |
284 |
aacagggttgcttgtgcctctggggcatg |
312 |
Q |
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| T |
32883134 |
aacagggttgcttatgcctctggggcatg |
32883106 |
T |
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