View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_6 (Length: 320)
Name: NF1603_low_6
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 36990860 - 36990553
Alignment:
| Q |
1 |
ctgacatgtgaggtgaagttgcagcagataaatggagtgatccattttcttctaagatattattgagtgaattatttgaactgagttgaagagaaggaga |
100 |
Q |
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| T |
36990860 |
ctgacatgtgaggtgaagttgcagcagataaatggagtgatccattttcttctaagatattattgagtgaattatttgaactgagttgaagagaaggaga |
36990761 |
T |
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| Q |
101 |
tgaagttgatgatgaaaggcttctagtgaatatgttgttattgaagggttttggtggcacagac---gacatgagttcatgaggggatgataatgggagc |
197 |
Q |
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| T |
36990760 |
tgaagttgatgatgaaaggcttctagtgaatatgttgttattgaagggttttggtggcacagacatggacatgagttcatgaggggatgataatgggagc |
36990661 |
T |
|
| Q |
198 |
ttgtgatctgaatggttgttgaattctgatacagttccaccaatttgagggttattaatggggtttaaaggtaatgaagaaacgagatttgagattggtt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36990660 |
ttgtgatctgaatggttgttgaattctgatacagttccacaaatttgagggttattaatggggtttaaaggtaatgaagaaacgagatttgagattggtt |
36990561 |
T |
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| Q |
298 |
ggtgttgc |
305 |
Q |
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|||||||| |
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| T |
36990560 |
ggtgttgc |
36990553 |
T |
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