View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_7 (Length: 304)
Name: NF1603_low_7
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 50975331 - 50975627
Alignment:
| Q |
1 |
tcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaagatgactagatttgggcatgttgaggctggcttaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50975331 |
tcgtgtaatggcgacattggactaattctcatttcgatttgttagttagaatgtagagaacaaagatgactagatttgggcatgttgaggctggcttaac |
50975430 |
T |
|
| Q |
101 |
aatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagctagaacagcttttttgctagcttagtttcaatatatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50975431 |
aatcaacacaattatttgaatcttggaagaaatttatagtgctcaggagattgaggagaagctagaacagcttttttgctagcttagtttca----atac |
50975526 |
T |
|
| Q |
201 |
aaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttccactttcacagtcgtgtatttctcttcttctctctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
50975527 |
aaccatctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatgtcttttccactttcacaatcgtgtatttctcttctcatctctc |
50975626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 37618789 - 37618716
Alignment:
| Q |
206 |
tctctctcacttcctctccatgccaatgaagaaaatttcactctcttccatatcttttccactttcacagtcgt |
279 |
Q |
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| T |
37618789 |
tctctctctctctctctccacgccaatgaagaaaatttcactctcttccatgtcttttctactttcaccgtcgt |
37618716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 8541278 - 8541326
Alignment:
| Q |
242 |
ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttct |
292 |
Q |
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| T |
8541278 |
ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttct |
8541326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 23820613 - 23820661
Alignment:
| Q |
242 |
ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttct |
292 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
23820613 |
ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttct |
23820661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 40172993 - 40172945
Alignment:
| Q |
242 |
ttcactctcttccatatcttttccactttcacagtcgtgtatttctcttct |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
40172993 |
ttcactctcttccatgtcttttccactttcacagtc--gtatttctcttct |
40172945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 19766377 - 19766422
Alignment:
| Q |
231 |
atgaagaaaatttcactctcttccatatcttttccactttcacagt |
276 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
19766377 |
atgaagaaaatttcaatctctcccatgtcttttccactttcacagt |
19766422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 17682135 - 17682176
Alignment:
| Q |
231 |
atgaagaaaatttcactctcttccatatcttttccactttca |
272 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
17682135 |
atgaagaaaatttcaatctctcccatgtcttttccactttca |
17682176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 84286 - 84242
Alignment:
| Q |
172 |
ttttttgctagcttagtttcaatatatacaaccatctctctcacttcct |
220 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
84286 |
ttttttgctagcttagtttcaata----caaccatctctctcacttcct |
84242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 35560362 - 35560319
Alignment:
| Q |
231 |
atgaagaaaatttcactctcttccat-atcttttccactttcac |
273 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
35560362 |
atgaagaaaatttcactatcttccatcatcttttccactttcac |
35560319 |
T |
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