View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_9 (Length: 246)
Name: NF1603_low_9
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25788441 - 25788211
Alignment:
| Q |
1 |
tgtgcaacagcgataaatatcgaagttctttactcattctgaaagagggaagtgtaccaataaagttattgaatgataagtctaaatgaacaattacagt |
100 |
Q |
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| T |
25788441 |
tgtgcaacagcgataaatatcgaagttctttactcattctgaaagagggaagtgtagcaataaagttattgaatgataagtctaaatgaacaattacagt |
25788342 |
T |
|
| Q |
101 |
atattgtcaaatcctttatatttttaaggcaaacaaacgaccacaagtgtaaaaccaataaactaaagtttggattcactttatgttgtaaagtaaaatt |
200 |
Q |
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||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25788341 |
atactgtcaaatcctttata--tttaaggtaatcaaacgaccacaagtgtaaaaccaataaacaaaagtttggattcactttatgttgtaaagtaaaatt |
25788244 |
T |
|
| Q |
201 |
ttaagaaacgcggttatcgtctatgttttgtag |
233 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
25788243 |
ttaagaaacgctgttatcgtctatgttttgtag |
25788211 |
T |
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