View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1604-INSERTION-1 (Length: 230)

Name: NF1604-INSERTION-1
Description: NF1604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1604-INSERTION-1
NF1604-INSERTION-1
[»] chr7 (26 HSPs)
chr7 (8-158)||(8610644-8610794)
chr7 (10-178)||(8602694-8602862)
chr7 (16-178)||(8591358-8591520)
chr7 (52-178)||(7876850-7876976)
chr7 (52-170)||(8647669-8647787)
chr7 (29-138)||(3148371-3148480)
chr7 (52-172)||(8582629-8582749)
chr7 (16-149)||(27829325-27829458)
chr7 (40-128)||(8660254-8660342)
chr7 (52-128)||(6790420-6790496)
chr7 (52-176)||(8635515-8635639)
chr7 (29-128)||(1302321-1302420)
chr7 (52-141)||(8577286-8577375)
chr7 (52-172)||(8572556-8572676)
chr7 (52-128)||(10493017-10493093)
chr7 (35-163)||(29576988-29577116)
chr7 (52-170)||(8668433-8668551)
chr7 (52-125)||(13332166-13332239)
chr7 (76-172)||(8568804-8568900)
chr7 (52-140)||(17261390-17261478)
chr7 (51-128)||(8104075-8104152)
chr7 (52-116)||(8655371-8655435)
chr7 (52-150)||(8546663-8546761)
chr7 (106-172)||(29581235-29581301)
chr7 (51-128)||(8016308-8016385)
chr7 (76-128)||(8584576-8584628)
[»] chr2 (9 HSPs)
chr2 (29-128)||(16656593-16656692)
chr2 (34-128)||(43626330-43626424)
chr2 (64-141)||(12244431-12244508)
chr2 (58-141)||(12257936-12258019)
chr2 (58-149)||(12235787-12235878)
chr2 (58-141)||(14705460-14705543)
chr2 (76-137)||(12000334-12000395)
chr2 (58-149)||(7543266-7543357)
chr2 (76-141)||(16661106-16661171)
[»] chr1 (3 HSPs)
chr1 (29-128)||(4677533-4677632)
chr1 (40-128)||(15596069-15596157)
chr1 (8-150)||(34465220-34465362)
[»] chr5 (2 HSPs)
chr5 (52-131)||(28220954-28221033)
chr5 (52-128)||(42554203-42554279)
[»] chr4 (5 HSPs)
chr4 (52-170)||(9323080-9323198)
chr4 (52-170)||(9377559-9377677)
chr4 (52-170)||(9335052-9335169)
chr4 (76-141)||(30776114-30776179)
chr4 (76-141)||(35133451-35133516)
[»] chr6 (1 HSPs)
chr6 (97-128)||(28911324-28911355)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 8610794 - 8610644
Alignment:
Q  8 ttgctgtatggcaggaacaaaacaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaag 107  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8610794 ttgctgtatggcaggaacaaaacaacagagctgagataatccataatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaag 8610695  T
Q  108 gttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacac 158  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  8610694 gttgataggtgatgctgctaaaaatcaagctgcttcaaacccagctaacac 8610644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 8602862 - 8602694
Alignment:
Q  10 gctgtatggcaggaacaaaacaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggt 109  Q
    ||||| |||||||| ||||||||||| |||||||||||  | ||||| |||||||||||||| ||||||||||||||||||||  |||||||| ||||||    
T  8602862 gctgtttggcaggaccaaaacaacagggcagagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggt 8602763  T
Q  110 tgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatttatctt 178  Q
    |||| ||||||||||| ||||| || |||||||| |||||||  |||||||||| ||||||||||||||    
T  8602762 tgatcggtgatgctgccaaaaatcaggctgcttctaacccagtcaacactatctttggtaatttatctt 8602694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 8591520 - 8591358
Alignment:
Q  16 tggcaggaacaaaacaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattg 115  Q
    |||||||| |||||||| | ||||||||||||  | ||||| |||||||| ||||  || |||||||||||||||||  || ||||||||||||||||||    
T  8591520 tggcaggaccaaaacaatacagcagagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattg 8591421  T
Q  116 gtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatttatctt 178  Q
    |||||||||| |||||||| |||||||| |||||||| |||||| |||  |||||||||||||    
T  8591420 gtgatgctgcaaaaaaccaggctgcttctaacccagcaaacactgtcttcggtaatttatctt 8591358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 7876850 - 7876976
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||||||||| |||||||| || |||||||||||||||||| |  |||||||||||||||||||||||||||| ||||| || ||||| || ||||||     
T  7876850 aatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacccat 7876949  T
Q  152 ctaacactatctatggtaatttatctt 178  Q
    | |||||| ||| |||||| |||||||    
T  7876950 ccaacactgtctttggtaacttatctt 7876976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 8647787 - 8647669
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| |||||||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||| |||||||| || |||||||| |||||      
T  8647787 aatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaacccta 8647688  T
Q  152 ctaacactatctatggtaa 170  Q
    | |||||| ||| ||||||    
T  8647687 ccaacactgtctttggtaa 8647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 3148480 - 3148371
Alignment:
Q  29 acaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||||||||  ||||||||  | ||||| ||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  3148480 acaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaa 3148381  T
Q  129 aaaccaagct 138  Q
     || ||||||    
T  3148380 gaatcaagct 3148371  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 8582749 - 8582629
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| |||||||||| ||| || ||||||| |||||||||  || ||  |||||| ||||||||||||||||| ||||| ||||||||||| ||||||     
T  8582749 aatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaa 8582650  T
Q  152 ctaacactatctatggtaatt 172  Q
    | |||||||||||||||||||    
T  8582649 ccaacactatctatggtaatt 8582629  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 27829325 - 27829458
Alignment:
Q  16 tggcaggaacaaaacaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattg 115  Q
    |||||||| ||| |||||||||  ||||||||  | ||||||||||| ||||  || || ||||||| |||||||||| | ||  | || ||||||||||    
T  27829325 tggcaggatcaacacaacagagtggagattattcacaatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattg 27829424  T
Q  116 gtgatgctgctaaaaaccaagctgcttcaaaccc 149  Q
    ||||||||||||| |||||||||||||| |||||    
T  27829425 gtgatgctgctaagaaccaagctgcttccaaccc 27829458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 8660342 - 8660254
Alignment:
Q  40 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||| ||||| || || |||||||||| ||| || ||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8660342 gagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaa 8660254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 6790496 - 6790420
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||| ||||| |||| |||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||||    
T  6790496 aatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaa 6790420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 8635515 - 8635639
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| ||||| ||||||| ||| ||||||| |||||||||| |||| |  ||||||||||||||||||||||| |||||||| ||| | || ||||||     
T  8635515 aatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggcttcctctaacccat 8635614  T
Q  152 ctaacactatctatggtaatttatc 176  Q
    | || ||| ||| |||||| |||||    
T  8635615 ccaatactgtctttggtaacttatc 8635639  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 1302420 - 1302321
Alignment:
Q  29 acaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||| |||| |||||| ||||| || || ||||| |||| ||| || || ||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  1302420 acaatagagtagagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaa 1302321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 8577375 - 8577286
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    ||||| ||||||||||||||||||||||||| |||||||||  |  ||  |||||| |||||||| |||||||| ||||| |||||||||    
T  8577375 aatgatcaaggaaacagaaccactccttcttgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaagctgct 8577286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 8572676 - 8572556
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| |||||||||||||| ||||| |||| |||||||||  || ||  |||||| ||||| ||||||||||| ||||| ||||||||| | || |||     
T  8572676 aatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgctactaatccat 8572577  T
Q  152 ctaacactatctatggtaatt 172  Q
    | || ||||||| ||||||||    
T  8572576 ccaatactatctttggtaatt 8572556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 10493017 - 10493093
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||||||||| ||||||||||||||    
T  10493017 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaa 10493093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 29576988 - 29577116
Alignment:
Q  35 gagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaacca 134  Q
    |||| ||||| ||| | ||||| ||||| || |||||||| |||||| |||| |||||| |||||   | |||||| |||||| ||||||||||||| ||    
T  29576988 gagctgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatca 29577087  T
Q  135 agctgcttcaaacccagctaacactatct 163  Q
     ||||| ||||||||| | ||||||||||    
T  29577088 ggctgcctcaaacccaaccaacactatct 29577116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 8668551 - 8668433
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| ||||||||| |||  || ||||||||||||||||||    |||| |||||||||||||| ||||||||||| || ||| ||||| | ||||| |    
T  8668551 aatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctgctactaaccctg 8668452  T
Q  152 ctaacactatctatggtaa 170  Q
      |||||||||| ||||||    
T  8668451 aaaacactatctttggtaa 8668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 13332166 - 13332239
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgc 125  Q
    ||||| |||||||| ||||| || ||||||||||||||||||    |||||||||| |||||||||||||||||    
T  13332166 aatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgc 13332239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 8568900 - 8568804
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 172  Q
    ||||||| |||||||||| || |   |||||| ||||||||||||||||| ||||| ||||||||||| || ||| | ||||||| || ||||||||    
T  8568900 ccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaatt 8568804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 17261478 - 17261390
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgc 140  Q
    ||||| |||||||||| ||  ||||||||||||||||||||  || | ||| |||||||||| |||||||| ||||| || ||||||||    
T  17261478 aatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatcaagctgc 17261390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 8104152 - 8104075
Alignment:
Q  51 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||||| ||||| |||||||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8104152 taatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8104075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 8655435 - 8655371
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattgg 116  Q
    ||||| ||||| || ||||| || |||||| ||||||||||| ||||| ||||||||||||||||    
T  8655435 aatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 8546761 - 8546663
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccca 150  Q
    ||||| |||||||||| ||| || ||||||| |||||||||| |  ||   |||||| |||||||||||||||| ||||| || ||| |||| ||||||    
T  8546761 aatgatcaaggaaacaaaacaacaccttcttgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttctaaccca 8546663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 29581235 - 29581301
Alignment:
Q  106 aggttgattggtgatgctgctaaaaaccaagctgcttcaaacccagctaacactatctatggtaatt 172  Q
    ||||||||| || ||||||||||||| || |||||  |||||||| | |||||||||| ||||||||    
T  29581235 aggttgattagtaatgctgctaaaaatcaggctgccgcaaacccaacaaacactatctttggtaatt 29581301  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 8016308 - 8016385
Alignment:
Q  51 taatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||||| ||||| ||| |||| || || |||| |||||||||| |||||  | |||||||||| ||||||||||||||    
T  8016308 taatgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaa 8016385  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 8584576 - 8584628
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||| |||||||||||  | ||||||||||||||| |||||| |||||||||    
T  8584576 ccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaa 8584628  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 16656593 - 16656692
Alignment:
Q  29 acaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||||||||||||||| ||  | ||||| || ||||||||||| || |||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  16656593 acaacagagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaa 16656692  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 43626424 - 43626330
Alignment:
Q  34 agagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||| |||||||||| | ||||| |||||||||||||| || |||||||||||| ||||| || | || ||||||||||||||||||||||||||    
T  43626424 agagtagagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgctaa 43626330  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 12244431 - 12244508
Alignment:
Q  64 aacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    |||||||| || ||||||| |||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  12244431 aacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgct 12244508  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 12257936 - 12258019
Alignment:
Q  58 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    |||||||||||||| || ||||||| |||||||||  || | ||||||||||||||||||||||||||||| || |||||||||    
T  12257936 caaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctgct 12258019  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 12235878 - 12235787
Alignment:
Q  58 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 149  Q
    ||||| || ||||| || |||||||||||||||||| | ||  |||| ||||||||||||||||||||||| || ||||||||||| |||||    
T  12235878 caaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctgcttccaaccc 12235787  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 14705543 - 14705460
Alignment:
Q  58 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    ||||| || ||||| ||||||||||||||||||||| | ||  ||||  |||||||||||||||||||||| || |||||||||    
T  14705543 caaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgct 14705460  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 12000395 - 12000334
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagc 137  Q
    ||||||| |||||||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  12000395 ccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaaaaaccaagc 12000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 7543357 - 7543266
Alignment:
Q  58 caaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaaccc 149  Q
    ||||| |||||||| || |||||||||||||||||| | ||  |||| |||||||| ||||||  |||||| || ||||||||||| |||||    
T  7543357 caaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttccaaccc 7543266  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 16661106 - 16661171
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    |||||||||||||||||  |||||| |||||||||| | |||| |||||||||  | |||||||||    
T  16661106 ccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaaggatcaagctgct 16661171  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 4677533 - 4677632
Alignment:
Q  29 acaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    |||||||||  |||||||| || ||||||||||| |||| ||| || |||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  4677533 acaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaa 4677632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 15596157 - 15596069
Alignment:
Q  40 gagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||||||| | ||||| |||||||||||||  || |||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  15596157 gagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaa 15596069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 34465220 - 34465362
Alignment:
Q  8 ttgctgtatggcaggaacaaaacaacagagcagagattatctataatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaag 107  Q
    |||| ||||||||||||||| |||  |||| |||||||||  | ||||| ||||| |||| |||||| |||||||||||||||||  || ||||||||||    
T  34465220 ttgcagtatggcaggaacaacacagtagagtagagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaag 34465319  T
Q  108 gttgattggtgatgctgctaaaaaccaagctgcttcaaaccca 150  Q
     ||||| ||| |||||||||| || ||| ||||| | ||||||    
T  34465320 attgatcggtaatgctgctaagaatcaaactgctaccaaccca 34465362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 28221033 - 28220954
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaa 131  Q
    ||||| ||||| |||| ||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  28221033 aatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaa 28220954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 42554203 - 42554279
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||| ||||| |||| ||| || |||||||||||||||||  || || || |||||||||||||||||||||||||    
T  42554203 aatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaa 42554279  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 9323080 - 9323198
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9323080 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9323179  T
Q  152 ctaacactatctatggtaa 170  Q
      |||||||||| ||||||    
T  9323180 aaaacactatctttggtaa 9323198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 9377559 - 9377677
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||||||||||||||||||| || ||| ||||| | ||||| |    
T  9377559 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctg 9377658  T
Q  152 ctaacactatctatggtaa 170  Q
      |||||||||| ||||||    
T  9377659 aaaacactatctttggtaa 9377677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 9335052 - 9335169
Alignment:
Q  52 aatgaacaaggaaacagaaccactccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgcttcaaacccag 151  Q
    ||||| ||||||||| |||| || ||||||||||||||||||    |||| |||||||||| ||||||||||||||| || ||| ||||| | ||||| |    
T  9335052 aatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgctaagaatcaatctgctactaaccctg 9335150  T
Q  152 ctaacactatctatggtaa 170  Q
      |||||||||| ||||||    
T  9335151 aaaacactatctttggtaa 9335169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 30776179 - 30776114
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    |||||||||||||||||| |||||| |||||||||| | |||| |||||||||  |||| ||||||    
T  30776179 ccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgct 30776114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 35133516 - 35133451
Alignment:
Q  76 ccttcttttgttgctttctctgatgatcaaaggttgattggtgatgctgctaaaaaccaagctgct 141  Q
    ||||||| | |||||||| || | |||||||||||||| |||||||||||||| || |||||||||    
T  35133516 ccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgct 35133451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 28911355 - 28911324
Alignment:
Q  97 gatgatcaaaggttgattggtgatgctgctaa 128  Q
    ||||||||||||||||||||||||||||||||    
T  28911355 gatgatcaaaggttgattggtgatgctgctaa 28911324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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