View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_high_12 (Length: 401)
Name: NF16040_high_12
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 16778959 - 16779125
Alignment:
| Q |
11 |
gaagcaaaggcaaatggaatgagaaacatgcagatcaggaaaagacaaaacaaattcaccactattgttggagcgaccacatgttccgcagctaaaccta |
110 |
Q |
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| T |
16778959 |
gaagcaaaggcaaatggaatgagagacatgcagatcaggaaaagacaaaacaaattcaccactattgtggaagcgaccacatgttccgcagctaaaccta |
16779058 |
T |
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| Q |
111 |
-cccatcatgtgccttgtgtcagatgcaatgttgtgctgtttctgcttccttcctgcatgaattttt |
176 |
Q |
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| T |
16779059 |
ccccatcatgtgccttgtgtcagatgcaatgttgtgctgtttctgcttccttcctgcatgacttttt |
16779125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 246 - 401
Target Start/End: Original strand, 16779199 - 16779354
Alignment:
| Q |
246 |
tttaaggaggagtccaataatgaaagacaaaagcatattaaaaagtttggtcgatgtcattttttataggaccaatatttggtgaatccaccaaatttct |
345 |
Q |
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| T |
16779199 |
tttaaggaggactccaaaaatgaaagacaaaagcatattaaaaagtttggtcgatgtcattttttataggaccaatatttggtgaatccaccaaatttct |
16779298 |
T |
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| Q |
346 |
taatgtgtgtttctcttccataaatgaaatcctccatctattcgagaaatgaatca |
401 |
Q |
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| T |
16779299 |
taacgtatgtttctcttccataaatgaaattctccatctattcaagaaatggatca |
16779354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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