View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_high_16 (Length: 337)
Name: NF16040_high_16
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 39021896 - 39022198
Alignment:
| Q |
19 |
agaaacaaacaacaaaagcaggaaaatagcatctcctagggaatccacgatctgnnnnnnnnnnnnnnnnnagaagcccttcttcttcaatggcattgaa |
118 |
Q |
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| T |
39021896 |
agaaacaaacaacaaaagcaggaaaataacatctcctagggaatccacgatctgcatcatcatcatcatcaagaagcccttcttcttcaatggcattgaa |
39021995 |
T |
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| Q |
119 |
ctgatccttccaaggacgccaattacctttcctgttattatgggaagcttgactgctcttacgtgaggcagagtatctggtggaagaagattcacgtgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021996 |
ctgatccttccaaggacgccaattacctttcctgttattatgggaagcttgactgctcttacgtgaggcagagtatctggtggaagaagattcacgtgaa |
39022095 |
T |
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| Q |
219 |
tgtgggcccaacgatgagttggaatgagaatgaggaggagatcccaacgggctttgaagagggcttgagttgaaggagtttgttgttttctcaccgtcgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39022096 |
tgtgggcccaacgatgagttggaatgagaatgaggaggagatcccaacgggctttgaagagggcttgagttgaaggagtttgttgttttctcaccgtcgt |
39022195 |
T |
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| Q |
319 |
tgg |
321 |
Q |
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||| |
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| T |
39022196 |
tgg |
39022198 |
T |
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