View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_high_20 (Length: 270)
Name: NF16040_high_20
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 16779379 - 16779607
Alignment:
| Q |
19 |
atcttatggttttagatatttgaatctcttaattatatttgattaagattttcacttatgactgttgtgttacatacaaaaaagcatttatgaagannnn |
118 |
Q |
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| T |
16779379 |
atcttatggttttagatgtttgaatctcttaattatatttgattaagattttcacttatgactgttgtgttacatatagaaaagcatttatgaagatttt |
16779478 |
T |
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| Q |
119 |
nnnnagtggaacatttatgaagagatctcaactacttaaataaattttaattatattgagatattagtcttgcatataattcttacatggtcacactcac |
218 |
Q |
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| T |
16779479 |
ttttagatgaacatttatgaagagatgtcaactacttaaataaattttaattatattgagatattagtcttgcaaataattcttacattg------tcac |
16779572 |
T |
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| Q |
219 |
aactacaaattcaagtcatttgaacacataaaatt |
253 |
Q |
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| T |
16779573 |
aactacaaattcaagtcatttgaacacataaaatt |
16779607 |
T |
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