View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16040_high_21 (Length: 241)
Name: NF16040_high_21
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 44186815 - 44187001
Alignment:
| Q |
18 |
ggagaagatgcaggccaagttgatgatgatgatgaaaatgagattgacgaagattatcaacactttagtggggaagaagctttgaaaatttattgcaaca |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44186815 |
ggagaagatggaggccaagttgatgatgatgatgaaaatgagattgacgaagattatcaacactttagtggggaagaagctttgaaaatttattgcaaca |
44186914 |
T |
|
| Q |
118 |
tatcactaaattaaaattaaacctaccaccagtttatcattcatgtattaactatattgatttgctcatcttttgcaccgtaaagag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44186915 |
tatcactaaattaaaattaaacctaccaccagtttatcattcatgtattaactttattgatttgctcatcttttgcaccgtaaagag |
44187001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 45872330 - 45872409
Alignment:
| Q |
22 |
aagatgcaggccaagttgatgatgatgatgaaaatgagattgacgaagattatcaacactttagtggggaagaagctttgaaa |
104 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||| ||||||||||||||| |||||||||||| | ||||||||| |||| |
|
|
| T |
45872330 |
aagatgcaggtcaagttgat---gatgatgagaataggattgacgaagattaccaacactttagtaagaaagaagcttggaaa |
45872409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 8015074 - 8015105
Alignment:
| Q |
18 |
ggagaagatgcaggccaagttgatgatgatga |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8015074 |
ggagaagatgcaggccaagttgatgatgatga |
8015105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University