View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16040_high_4 (Length: 530)
Name: NF16040_high_4
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 513
Target Start/End: Complemental strand, 660762 - 660251
Alignment:
| Q |
5 |
ttattgaaaaccagttgtgaaagttcagcaattctctataataggagagataaaagcgtaaagagaatcaaaaaatcttggtggttcaatgtccaggatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660762 |
ttattgaaaaccagttgtgaaagttcagcaattctctataattggagagataaaagcataaagagaatcaaaaaatcttggtggttcaatgtccaggatt |
660663 |
T |
|
| Q |
105 |
atgttgaaagcttggttacgt-----------------catattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatat |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660662 |
atgttgaaagcttggttacgtattgttgaatgtaagttcatattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatat |
660563 |
T |
|
| Q |
188 |
atttttgcaaaattaatatatgttggaagatttgttatagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattgga |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660562 |
atttttgcaaaattaatatatgttggaagatttgctatagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattgga |
660463 |
T |
|
| Q |
288 |
ggttgttgccgcacaattcaacgttggcaagctcacgaccaaacatctctaattagattaatgaaca----nnnnnnnnnctctttcttgcattttgtat |
383 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
660462 |
ggtt------------------gttggcaagctcacgaccaaacatctctaattagattaatgaacatttttttttttttctctttcttgcattttgtat |
660381 |
T |
|
| Q |
384 |
attattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtgctaatatatgtggagaaaat |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
660380 |
attattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactagtttttcatttatcttggattcatgctaatatatgtggagaaaat |
660281 |
T |
|
| Q |
484 |
acaactcaaataaagccctaatgcacattg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
660280 |
acaactcaaataaagccctaatgcacattg |
660251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 364 - 508
Target Start/End: Original strand, 22070977 - 22071119
Alignment:
| Q |
364 |
ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg |
463 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| | |||||||||||||| |||||||||| |||| || |||||||||| ||| ||||||||||| || |
|
|
| T |
22070977 |
ctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg |
22071074 |
T |
|
| Q |
464 |
ctaatatatgtggagaaaatacaactcaaataaagccctaatgca |
508 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
22071075 |
ctaatatatgtggagaaaatacaacttaaatatggccctaatgca |
22071119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 495
Target Start/End: Original strand, 22064987 - 22065146
Alignment:
| Q |
334 |
ctctaattagattaatgaacannnnnnnnnctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttg |
433 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||| | || ||| ||||| ||||| | |||||||||| |||||||| |
|
|
| T |
22064987 |
ctctaattagattaatgaacattctttttgctctttcttgcattttgtaa--tatttaagcatagtaaggaaattattcgatttcaactcaaatttcttg |
22065084 |
T |
|
| Q |
434 |
aactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatacaactcaaata |
495 |
Q |
| |
|
|||| |||||| || ||||||||||| || | | ||||||||||||||||||||| ||||| |
|
|
| T |
22065085 |
aactagtttttagttgatcttggattcatgtttacatatgtggagaaaatacaacttaaata |
22065146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 22070781 - 22070827
Alignment:
| Q |
148 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
194 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
22070781 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
22070827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 508
Target Start/End: Original strand, 22082314 - 22082416
Alignment:
| Q |
410 |
tttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg----ctaatatatgtggagaaaatacaactcaaataaagccctaat |
505 |
Q |
| |
|
|||| |||||||||| |||| ||| |||||||||| ||| |||| ||||| | |||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
22082314 |
tttgatttcaactcaaattttttgtactggtttttaattgatctatgattcatatatactaatatatgtggagaaaatacaacttaaatatggccgtaat |
22082413 |
T |
|
| Q |
506 |
gca |
508 |
Q |
| |
|
||| |
|
|
| T |
22082414 |
gca |
22082416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 459
Target Start/End: Original strand, 15963235 - 15963311
Alignment:
| Q |
383 |
tattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggatt |
459 |
Q |
| |
|
||||||| ||||||| ||| | ||||||||||||||| |||| |||||| |||| |||||| ||| |||||||||| |
|
|
| T |
15963235 |
tattatttatgcctaaatagaaggttatttggtttcaattcagttttcttaaacttgtttttaattcatcttggatt |
15963311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University