View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16040_high_6 (Length: 511)

Name: NF16040_high_6
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16040_high_6
NF16040_high_6
[»] chr7 (3 HSPs)
chr7 (1-494)||(2925460-2925953)
chr7 (1-314)||(2920255-2920568)
chr7 (397-494)||(2920150-2920244)
[»] chr2 (1 HSPs)
chr2 (149-360)||(29272246-29272460)
[»] chr4 (2 HSPs)
chr4 (143-360)||(9447613-9447837)
chr4 (380-494)||(9447509-9447611)
[»] chr3 (6 HSPs)
chr3 (131-302)||(31357597-31357768)
chr3 (132-302)||(31346938-31347108)
chr3 (342-493)||(31357781-31357929)
chr3 (342-493)||(31347121-31347269)
chr3 (16-103)||(31357428-31357515)
chr3 (16-103)||(31346756-31346843)


Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 2925953 - 2925460
Alignment:
Q  1 tatcattggcagcaagtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagc 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2925953 tatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgagatatcagc 2925854  T
Q  101 atccgcatcaaattctctccgaaacgaaaattcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgct 200  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||| |||||||    
T  2925853 atccgcatcaaattctctcccaaacgaaaactcttgggagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgct 2925754  T
Q  201 tcagctaaagggtaaacatccatttgttttgaagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttt 300  Q
     |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2925753 ccagctaaagggtaaacatccatttgttttgaagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtt 2925654  T
Q  301 tctctgattgatttacattggtgaatgaattgaactcatttgagaaatcaggaatagtgatttgattttcactattgtatggagaaaattccaaaaatgg 400  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  2925653 tctctgattgatttggattggtgaatgaattgaactcatttgagaaatcaggaatagtgattttattttcactattgtagggagaaaattccaaaaatgg 2925554  T
Q  401 aggcaatagagatgctgcattagtatttgttggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaatta 494  Q
    || | |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2925553 agcccatagagatgctgcattagtatttgatggttcttctctagaggagttagaccttccaagttttgaaccattcattttctttccacaatta 2925460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 2920568 - 2920255
Alignment:
Q  1 tatcattggcagcaagtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagc 100  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2920568 tatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgagatatcagc 2920469  T
Q  101 atccgcatcaaattctctccgaaacgaaaattcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgct 200  Q
    |||||||||||||||||||| ||| ||||| ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||    
T  2920468 atccgcatcaaattctctcccaaaagaaaactctcggg---agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttcct 2920372  T
Q  201 tcagctaaaggg---taaacatccatttgttttgaagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttg 297  Q
    ||||| ||||||   ||||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||    
T  2920371 tcagcgaaagggttataaacatccatttgttttgaagaggatgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttg 2920272  T
Q  298 ttttctctgattgattt 314  Q
     ||||||||||||||||    
T  2920271 atttctctgattgattt 2920255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 397 - 494
Target Start/End: Complemental strand, 2920244 - 2920150
Alignment:
Q  397 atggaggcaatagagatgctgcattagtatttgttggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaatta 494  Q
    ||||||||||||||| |||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2920244 atggaggcaatagagttgc---attagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaatta 2920150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 149 - 360
Target Start/End: Complemental strand, 29272460 - 29272246
Alignment:
Q  149 gtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggt---aaacatccatttgttttgaagaagatgagatg 245  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||| |||    
T  29272460 gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg 29272361  T
Q  246 ttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgatttacattggtgaatgaattgaactcatttgaga 345  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||  |||||||  ||||||||||||||| ||| |||  ||||    
T  29272360 ttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttctctatttgatttggattggtgaatgaattcaacacatgagaga 29272261  T
Q  346 aatcaggaatagtga 360  Q
    |||||| ||||||||    
T  29272260 aatcagaaatagtga 29272246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 143 - 360
Target Start/End: Complemental strand, 9447837 - 9447613
Alignment:
Q  143 gaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaaggg---taaacatccatttgttttgaagaagat 239  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||   ||||||||||||||||||||||| |||    
T  9447837 gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat 9447738  T
Q  240 gagatgttcaag----atacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttctctgattgatttacattggtgaatgaattgaac 335  Q
    || |||||||||    ||||| |||||||||||||||||||||||||| | ||||||||||| |||||||  |||||||  ||||||||||||||| |||    
T  9447737 gaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttctctatttgatttggattggtgaatgaattcaac 9447638  T
Q  336 tcatttgagaaatcaggaatagtga 360  Q
     |||  |||||||||| || |||||    
T  9447637 acatgagagaaatcagaaacagtga 9447613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 494
Target Start/End: Complemental strand, 9447611 - 9447509
Alignment:
Q  380 tggagaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctctagaggagttagaccttccaagttttgaaccattcatt 479  Q
    ||||||| | ||||| ||||||||||||||||||||   ||||||||||| |||||||||||         |||||||| ||||||||||||| ||||||    
T  9447611 tggagaataatccaacaatggaggcaatagagatgc---attagtatttgatggtccttctc---------tagacctttcaagttttgaaccgttcatt 9447524  T
Q  480 ttgtttccacaatta 494  Q
    || ||||||||||||    
T  9447523 ttctttccacaatta 9447509  T

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Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 31357597 - 31357768
Alignment:
Q  131 ttcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggtaaacatccatttgtttt 230  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||||   | || ||||||||||||| |||||||||| |||||||    
T  31357597 ttcttgagagaagaaaaagtttgacgaattcccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccaattgtttt 31357696  T
Q  231 gaagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttc 302  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  31357697 gaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc 31357768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 132 - 302
Target Start/End: Original strand, 31346938 - 31347108
Alignment:
Q  132 tcttgggagaagaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagccattgttgcttcagctaaagggtaaacatccatttgttttg 231  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||  |||||||   | || ||||||||||||| |||||||||||||||||||    
T  31346938 tcttgagagaagaaaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgttttg 31347037  T
Q  232 aagaagatgagatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttgttttc 302  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  31347038 aagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc 31347108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 342 - 493
Target Start/End: Original strand, 31357781 - 31357929
Alignment:
Q  342 gagaaatcaggaatagtgatttgattttcactattgtatggagaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctc 441  Q
    |||||||||| || |||| |||| ||||||||||||||||||||| | ||||| ||| |||||||||||||| |   ||||||||||| |||||||||||    
T  31357781 gagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattc---attagtatttgatggtccttctc 31357877  T
Q  442 tagaggagttagaccttccaagttttgaaccattcattttgtttccacaatt 493  Q
    ||||||||||| |||||||| |||||||||||| | |||| |||||||||||    
T  31357878 tagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatt 31357929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 342 - 493
Target Start/End: Original strand, 31347121 - 31347269
Alignment:
Q  342 gagaaatcaggaatagtgatttgattttcactattgtatggagaaaattccaaaaatggaggcaatagagatgctgcattagtatttgttggtccttctc 441  Q
    |||||||||| || |||| |||| ||||||||||||||||||||| | ||||| ||| |||||||||||||| |   ||||||||||| |||||||||||    
T  31347121 gagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattc---attagtatttgatggtccttctc 31347217  T
Q  442 tagaggagttagaccttccaagttttgaaccattcattttgtttccacaatt 493  Q
    ||||||||||| |||||||| |||||||| ||| | |||| ||| |||||||    
T  31347218 tagaggagttaaaccttccatgttttgaaacatcctttttctttgcacaatt 31347269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31357428 - 31357515
Alignment:
Q  16 gtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagcatc 103  Q
    ||||||||||| |||||||||| ||||||| | | ||| || ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  31357428 gtccagtagaagctggtgacaattcttgattctctgacaacttttgaaacatgccatttccatataccacagatgagatatcagcatc 31357515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31346756 - 31346843
Alignment:
Q  16 gtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagcatc 103  Q
    ||||||||||| ||| |||||  ||||||| |||| |||||||||||  |||| ||||||||||||||||||||||||||||| ||||    
T  31346756 gtccagtagaagctgatgacagttcttgattcccaaaccacctttgaagcatgccatttccatataccacagatgagatatcatcatc 31346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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