View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_high_9 (Length: 463)
Name: NF16040_high_9
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 41379211 - 41379655
Alignment:
| Q |
18 |
aaatatgggagacaaactttgggatgaaggaactttgggatggttttggtttctctaggcataataaaccagcatctggnnnnnnnttataccaaagcaa |
117 |
Q |
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| T |
41379211 |
aaatatgggagacaaactttgggatgaaggaactttgggatggttttggtttccctaggcataataaaccagcatctggaaaaaaattataccaaagcaa |
41379310 |
T |
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| Q |
118 |
aatatgtgttttggtttctctaggtatcacctaattcgttagaaactgcagtctgcagagacaaactctttcaaggatcttcagcgcatataacggttat |
217 |
Q |
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| T |
41379311 |
aatatgtgttttggtttctctaggtatcacctaattcgttagaaactgtagtctgcagagaca--ctctttcgaggatcttcagcgcatataacgattat |
41379408 |
T |
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| Q |
218 |
gtat----------------tcttacgcataagtcaataatcgaaccccacatcatatgcttaagtaatgtgagtcacttccccctcagaccacaccatt |
301 |
Q |
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|| | || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41379409 |
gtctattaaatggtgaaatttcctacgcataagtcaatagtcgaaccccacatcatatgcttaagtaatgtgagtcacttccccctcagaccacatcatt |
41379508 |
T |
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| Q |
302 |
ttggcagtaaaatcatgtctaatgatatgccaaccattagcttagacacatcatatgcttttgttgttcaagaatccgatctcgaacacgccaaatccaa |
401 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41379509 |
ttggtagtaaaatcatgtctaatgatatgctaaccattagcttagacacttcatatgtttttgttgttcaagaatctgatctcgaacacgccaaatccaa |
41379608 |
T |
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| Q |
402 |
caagattaaacagaatttcgatcttaatttggattttggtctctctg |
448 |
Q |
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| T |
41379609 |
caagactaaacagaatttcgatcttaatttggatttcggtctctctg |
41379655 |
T |
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