View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_10 (Length: 440)
Name: NF16040_low_10
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 9739224 - 9738820
Alignment:
| Q |
17 |
gatgaattggaaggagtatggaaagcagcaaatctttggcacatcatcaaggagaattttgaaattacagatggttttgtatctctatttttccagctac |
116 |
Q |
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| T |
9739224 |
gatgaattggaagcagtatggaaagcagcaaatctttggcacatcatcaaggagaattttgaaattacagatggttttgtatctctatttttccagctac |
9739125 |
T |
|
| Q |
117 |
tcgaacaactacctcaacaatttctcacttttatcacgactttatgctatatatggaagc-aagaaacgacaagttctagaacgatattgacactggccc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
9739124 |
tcgaacaactacctcaacaatttctcacttttatcacgactttatgctatatatggaagtgaagaaacgacaagctctagaacgatattgacactagccc |
9739025 |
T |
|
| Q |
216 |
tcgtatgtctacccatatggcacgcataaccctattgcaatggaagccagcttgcgcaaaggagggctatggcgaaggagaagagctgaataacagtggg |
315 |
Q |
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| T |
9739024 |
tcgtatgtctgcccatatggcacgcataaccctattgcaatggtagccagcttgcgcaaaggagggccacggcgaaggagaagagctaaataacagcggg |
9738925 |
T |
|
| Q |
316 |
acttctcgtcatgaacaaagtaaatggaggaaattggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaagatttgttatgac |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
9738924 |
acttctcgtcatgaacaaagtaaatggaggaaactggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaag-gttgttatggc |
9738826 |
T |
|
| Q |
416 |
attggt |
421 |
Q |
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|||||| |
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| T |
9738825 |
attggt |
9738820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 258
Target Start/End: Original strand, 46103889 - 46104092
Alignment:
| Q |
59 |
atcatcaaggagaattttgaaattacagatggttttgtatctctatttttccagctactcgaacaactacct---caacaatttctcacttttatcacga |
155 |
Q |
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| T |
46103889 |
atcatcaagaaaaatttgaaaatcacggatggttttgtatctctattattccagcttctcgagcaactaccttaacaacaacttaatacttttatcatga |
46103988 |
T |
|
| Q |
156 |
ctttatgctatatatggaagc-aagaaacgacaagttctagaacgatattgacactggccctcgtatgtctacccatatggcacgcataaccctattgca |
254 |
Q |
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| T |
46103989 |
ctttatggtgcatatggaagtgaagaaacgacaaactctgaaacgatattaatactagtactcgtatgtatgcccatatggcgcgcgaaaccatattgca |
46104088 |
T |
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| Q |
255 |
atgg |
258 |
Q |
| |
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|||| |
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| T |
46104089 |
atgg |
46104092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 402
Target Start/End: Complemental strand, 46016619 - 46016542
Alignment:
| Q |
325 |
catgaacaaagtaaatggaggaaattggcagagggggaggtaaagtgcattattggcacgacaattttcaaggaggaa |
402 |
Q |
| |
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||||||||||||| | |||||||||||| ||||||| ||||||||||||| || |||||||||||||||||||| |
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| T |
46016619 |
catgaacaaagtagaaggaggaaattggaagaggggaaggtaaagtgcatgatcaatgcgacaattttcaaggaggaa |
46016542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 46016842 - 46016728
Alignment:
| Q |
113 |
ctactcgaacaactacct---caacaatttctcacttttatcacgactttatgctatatatggaagc-aagaaacgacaagttctagaacgatattgaca |
208 |
Q |
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|||||||| ||||||||| |||||| || |||||||| ||| |||||| || | |||||||||| ||||||||||||||||| | ||||||||| | |
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| T |
46016842 |
ctactcgagcaactaccttaacaacaacttatcacttttgtcatgactttgtggtgcatatggaagcgaagaaacgacaagttcttaagcgatattgata |
46016743 |
T |
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| Q |
209 |
ctggccctcgtatgt |
223 |
Q |
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| T |
46016742 |
catgctctcgtatgt |
46016728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 297
Target Start/End: Complemental strand, 1946057 - 1945891
Alignment:
| Q |
132 |
aacaatttctcacttttatcacgactttatgctatatatggaagc-aagaaacgacaagttctagaacgatattgacactggccctcgtatgtctaccca |
230 |
Q |
| |
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||||| ||||||||||| ||| ||||||||| | | ||||||||| |||||| |||||| | | || ||| ||||||||| ||||||||||||| ||| |
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| T |
1946057 |
aacaacttctcacttttgtcatgactttatggtgtgtatggaagcgaagaaatgacaagatttggagcgacattgacactaaccctcgtatgtctctcca |
1945958 |
T |
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| Q |
231 |
tatggcacgcataaccctattgcaatggaagccagcttgcgcaaaggagggctatggcgaaggagaa |
297 |
Q |
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|||||| | | ||||||| |||||| | | |||| | ||||||||||| || ||||||||||| |
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| T |
1945957 |
tatggcgtgtgaacccctattacaatggcaacaagctcggacaaaggagggccatagcgaaggagaa |
1945891 |
T |
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