View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_11 (Length: 424)
Name: NF16040_low_11
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 23930728 - 23931122
Alignment:
| Q |
18 |
aaaagaaaatcaaatggtgaaacccttttcaactcaacttcaacttcttcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930728 |
aaaagaaaatcaaatggtgaaacccttttcaactcaacttcaacttcttcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaa |
23930827 |
T |
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| Q |
118 |
caaaattacctaaagatgcttctttatatggtttgggagagaatacacaaccacatggtattaagttatatccaagtgacccttatactttatatacaac |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23930828 |
caaaattacctaaagatgcatctttatatggtttgggagagaatacacaaccacatgggattaaattatatccaagtgacccttatactttatatacaac |
23930927 |
T |
|
| Q |
218 |
agatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataatggtggaaaagcttcagcacatgctgtt |
317 |
Q |
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| T |
23930928 |
agatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataatggtggaaaagcttctgcacatgctgtt |
23931027 |
T |
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| Q |
318 |
ttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggtgtttttgatttttacttcttctc |
412 |
Q |
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| T |
23931028 |
ttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggtgtttttgatttttacttcttctc |
23931122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 90 - 409
Target Start/End: Complemental strand, 50121984 - 50121665
Alignment:
| Q |
90 |
ttcaaagaccaatatcttgagatttcaacaaaattacctaaagatgcttctttatatggtttgggagagaatacacaaccacatggtattaagttatatc |
189 |
Q |
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|||||||||||||| | || ||||| || ||||| || ||| |||||||||| |||||||| |||||||| ||||||||| |||| || |||||| ||| |
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| T |
50121984 |
ttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggagagaacacacaaccaaatggaatgaagttacatc |
50121885 |
T |
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| Q |
190 |
caagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataa |
289 |
Q |
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||| ||| ||||| ||||| |||||||| ||||| ||||||||||| || ||| |||||||||||||||| |||||| | || |||||||| |||||| | |
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| T |
50121884 |
caaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggatcacatcctgtatacatggatctcagaaatta |
50121785 |
T |
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| Q |
290 |
tggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggt |
389 |
Q |
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| T |
50121784 |
tggtggaaaaccttatgcacatggtgttcttttgttgaatagcaatggaatggatgtgttttacaaagggaactctttgacatacaagattattggagga |
50121685 |
T |
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| Q |
390 |
gtttttgatttttacttctt |
409 |
Q |
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| T |
50121684 |
atacttgatttttacttctt |
50121665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 66 - 409
Target Start/End: Complemental strand, 50112430 - 50112084
Alignment:
| Q |
66 |
tcagacccatttagttcacttgttttcaaagaccaatatcttgagatttcaacaaaattacctaaagatgcttctttatatggtttgggagagaatacac |
165 |
Q |
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|||||||||||| || || | || |||||||||||||| | || ||||| || ||| | || |||||||||||| | ||||||||||||||||| ||| |
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| T |
50112430 |
tcagacccatttggtccattggtcttcaaagaccaatacttggaaatttctactaaacttcccaaagatgcttctctgtatggtttgggagagaactcac |
50112331 |
T |
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| Q |
166 |
aaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcc |
265 |
Q |
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| T |
50112330 |
agccacatgggataaagttgtatcctaatgatccttatactttgtataccactgatgtagcagccattaatctcaacactgatctatatgggtctcatcc |
50112231 |
T |
|
| Q |
266 |
tatgtatatggatctgagaaataat---ggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaact |
362 |
Q |
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| | || |||||||| |||||| || ||||| || || ||||||| |||||||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
50112230 |
tgtatacatggatcttagaaatcatgaaggtggcaagcctaatgcacatggtgttttgttgttgaatagcaatggaatggatgtgttttacaaagggacc |
50112131 |
T |
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| Q |
363 |
tctttgacttataaggttattggtggtgtttttgatttttacttctt |
409 |
Q |
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|||||||| || ||| ||||||| || || |||||||||||||||| |
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| T |
50112130 |
tctttgacgtacaagattattggaggggtacttgatttttacttctt |
50112084 |
T |
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