View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16040_low_13 (Length: 388)
Name: NF16040_low_13
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_13 |
 | |
|
| [»] scaffold0536 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 26186856 - 26187212
Alignment:
| Q |
18 |
cctacaagattttgagaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggag |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26186856 |
cctacaagattttgagaaagaatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggag |
26186955 |
T |
|
| Q |
118 |
ggattgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26186956 |
ggattgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgtctgaggagcaattttacaatga |
26187055 |
T |
|
| Q |
218 |
gaagttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26187056 |
gaagttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctagattaacattagtgtagatgaaatggtgagaagggaa |
26187155 |
T |
|
| Q |
318 |
gagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaataa |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26187156 |
gagatagttaaggctgtgaagattttgatgggaagtggccaagagagaaaagaataa |
26187212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 40 - 371
Target Start/End: Original strand, 26179713 - 26180044
Alignment:
| Q |
40 |
tgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgttg |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26179713 |
tgaaagaaagcaaaaagggctatatcatatggaattgggcatcacaacttctgatattagatcaccctgcaacaggagggattgtgactcactgtggttg |
26179812 |
T |
|
| Q |
140 |
gaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgttttg |
239 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26179813 |
gaactcaattcttgaaagtgtgaactcgggtttgccaatgatcacgtggccggtgtttgctgagcaattttacaacgagaagttgcttgttgatgttttg |
26179912 |
T |
|
| Q |
240 |
aagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaaga |
339 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || ||||||||||||| |||||| || |||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
26179913 |
aagataggggtcccagtaggagcaaaagaaaacaatttatggattaacattaatgtagagaaagtggtgagaagagaagatatagttaaggctgtaaaga |
26180012 |
T |
|
| Q |
340 |
ttttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
26180013 |
ttttgatgggaagtgaccaagagagcaaagaa |
26180044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 26243029 - 26243361
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||| |||| ||||||||||||||| ||| |
|
|
| T |
26243029 |
atgaaagaaagcaacaagggctatatcatatgggactgggcaccgcaacttctgatattggatcacccagcaacaagaggaattgtgactcactgtggtt |
26243128 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| |||| || |||||||||||||| || |||||| || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26243129 |
ggaactcaattcttgaaagcttgaattctggtttgccaatgattacgtggccagtgtcttctgagcaattttacaatgagaagttgcttgttgatgtttt |
26243228 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
26243229 |
aaagataggggtcccagcaggagcaaaagtaaacaagttctggatgaacattacagtagatgaaatggtgagaagggaagagattacaaaggctgttgag |
26243328 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26243329 |
attttgatgggaagtggccaagagagcaaagaa |
26243361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 19103086 - 19102733
Alignment:
| Q |
19 |
ctacaagattttgaga-aataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggag |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
19103086 |
ctacaagattttgaggcaaggatgaaagaaagcaaaaagggatatatcatatggaattgggcaccgcaacttctgatattggatcaccctgcaacaggag |
19102987 |
T |
|
| Q |
118 |
ggattgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatga |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
19102986 |
ggattgtgactcactgtggttggaactcaattctcgaaagcttgaattcgggtttgccaatgatcacatggccaatttttgctgagcagttttacaatga |
19102887 |
T |
|
| Q |
218 |
gaagttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaa |
317 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||| |||| || | ||||| || | |||||| ||||| | |
|
|
| T |
19102886 |
aaagttgctcgtcgatgttttgaagataggggtcggagtaggagcaaaagtaaacaagttatggaatagccctagtgaagggatagtggtgaaaagggga |
19102787 |
T |
|
| Q |
318 |
gagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19102786 |
gagatagtgaaggctgtggagattttgatgggaagtggccaagagagcaaagaa |
19102733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 26251477 - 26251809
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
26251477 |
atgaaagaaagcaacaagggctatatcatctggaattgggcaccacaacttctgatattggatcaccctgcaacaggaggaattgtgactcattgtggtt |
26251576 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||| ||| |||||| | || | ||||||||||||||||| |||||| || || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26251577 |
ggaactcaactcttgaaagcttaaatgctggtttgccaatgatcacgtggccagtgtttgctgagcaattttacaatgagaagttgctagttgatgtttt |
26251676 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||| ||| ||| |||||||||||||||| || | | |||||| ||| |
|
|
| T |
26251677 |
gaagataggggtcccagtaggagcaaaagaaaataagttatggattaatattagtgaagaggaagtggtgagaagggaagaaattgcaatggctgttaag |
26251776 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
26251777 |
attttgatgggaagttgccaagagagcaaagaa |
26251809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 26191872 - 26192226
Alignment:
| Q |
18 |
cctacaagattttgaga-aataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacagga |
116 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26191872 |
cctacaagattttgagggaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttcagatattggatcaccctgcaacaggt |
26191971 |
T |
|
| Q |
117 |
gggattgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatg |
216 |
Q |
| |
|
|| ||||||||||||||| |||||||||| ||||| |||||| |||| | ||||||||||||||| | ||||||||| || |||||||||||||||| |
|
|
| T |
26191972 |
ggaattgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcgtggccaatgtttgccgagcaattttacaatg |
26192071 |
T |
|
| Q |
217 |
agaagttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaaggga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| || ||| ||||||| | ||||| |||||||| |
|
|
| T |
26192072 |
agaagttgcttgttgatgttttgaagataggggtccgagttggagcaaaagaaaacaagtcatgggatagtatttgtgtagaggcgatggttagaaggga |
26192171 |
T |
|
| Q |
317 |
agagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26192172 |
agagattgcaaaggctgttgagattttgatgggaagtggacaagagagcaaagaa |
26192226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 26278325 - 26278657
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
26278325 |
atgaaagaaagcaacaagggctacatcatatgggattgggcaccacaactgctgatattggaataccctgcaatcggagggattgtgactcattgtggtt |
26278424 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||| ||| |||||||| || | ||||||||||||||||| |||||| || || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26278425 |
ggaactcaactcttgaaagcgtaaatgctggtttgccaatgatcacgtggccagtgtttgccgaggaattttacaatgagaagttgcttgttgatgtttt |
26278524 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
26278525 |
gaagataggggtcccagttggagcaaaagtaaacaagttatggactaacattagtgtagaggaaatggtgagaagggaagagatagtgaaggctgtagag |
26278624 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |
|
|
| T |
26278625 |
attttgatgggaattagccaagagagcaaagaa |
26278657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 26155799 - 26156150
Alignment:
| Q |
22 |
caagattttgag-aaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggaggga |
120 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26155799 |
caagattttgaggaaaggatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggaggga |
26155898 |
T |
|
| Q |
121 |
ttgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaa |
220 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||| |||| || |||||||||||||| |||||||||||| || || |||||||||||||| || |
|
|
| T |
26155899 |
ttgtgactcactgtggttggaactcaactctcgaaagcttgaattctggtttgccaatgattacatggccaatgtttggtgatcaattttacaatgaaaa |
26155998 |
T |
|
| Q |
221 |
gttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctggattaac---attagtgtagatgaaatggtgagaagggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||| |||| || | | ||||| ||| | | |||||| |||||| |
|
|
| T |
26155999 |
gttgcttgttgatgttttgaagatagcggtcccagttggagcaaaagaaaataagttatggactagcactagtagtgaagacgtagtggtgaagagggaa |
26156098 |
T |
|
| Q |
318 |
gagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaag |
369 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
26156099 |
gagatagcgaaggctgtagagattttgatgggaagtgaccaagagagcaaag |
26156150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 42 - 371
Target Start/End: Original strand, 26298080 - 26298409
Alignment:
| Q |
42 |
aaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgttgga |
141 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
26298080 |
aaagaaagcagcaagggctatatcatatgggactgggcaccgcaacttctgatattggaccaccctgcaacaggaggaattgtgactcattgtggttgga |
26298179 |
T |
|
| Q |
142 |
actcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgttttgaa |
241 |
Q |
| |
|
|||||| ||| |||||| |||| | ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26298180 |
actcaactctcgaaagcttgaatgctggtttgccaatgatcacatggcctatttttgctgagcaattttacaatgagaagttgcttgttgatgttttaaa |
26298279 |
T |
|
| Q |
242 |
gataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaagatt |
341 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||| || ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
26298280 |
gataggggtcccagtcggagcaaaagaaaacaagttatggcttgacattagtgtagagaaagtggtgagaagggaagagatagagaagactgtgaagatt |
26298379 |
T |
|
| Q |
342 |
ttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
26298380 |
ttgatgggaagcggccaagagagcaaagaa |
26298409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 26204514 - 26204846
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
26204514 |
atgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgatattggatcaccctgcaacaggaggaattgtgactcactgtggtt |
26204613 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| |||| || |||||||||||||| ||||||||||| || || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
26204614 |
ggaactcaattcttgaaagcttgaattctggtttgccaatgataacatggccaatatttgctgaacaattttacaatgagaagctgcttgttgatgtttt |
26204713 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
|||||| || ||| || ||| |||||| ||| |||| ||| ||| |||| ||| ||| | | ||||||||||||| |||||||| |||||||| || |
|
|
| T |
26204714 |
gaagattggagtcgcggttggatcaaaagtgaaccagttttggcttagcattggtgaagaggtagtggtgagaagggaggagatagtgaaggctgttgag |
26204813 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
|| |||||||||| |||||||| |||||||||| |
|
|
| T |
26204814 |
atattgatgggaaatggccaagtgagcaaagaa |
26204846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 39 - 371
Target Start/End: Original strand, 26302438 - 26302770
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26302438 |
atgaaagaaagcaaaaaaggctatatcatatggaattgggcaccgcagcttctaatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
26302537 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| |||| | ||||||||||||||||||||||| || || ||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
26302538 |
ggaactcaattctcgaaagcttgaatgctggtttgccaatgatcacatggcccatttttgctgagcaatttaacaacgagaagtttcttgttgatgtttt |
26302637 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
|||||| || || || ||| ||||||| ||| |||| |||| || ||||||||||| | ||| ||||||||||||||||| | ||||| || || |
|
|
| T |
26302638 |
gaagattggagtttctgttggatcaaaagagaacgagttttggaatagaattagtgtagaggcaattgtgagaagggaagagattgcaaaggccgttgag |
26302737 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
26302738 |
attttgatgggaaatggccaagagagcaaagaa |
26302770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 39 - 362
Target Start/End: Original strand, 26224151 - 26224474
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
26224151 |
atgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgatattggatcaccctgcaacaggaggaattgtgactcactgtggtt |
26224250 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| |||| || |||||||||||||| ||||||||||| || || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
26224251 |
ggaactcaattcttgaaagcttgaattctggtttgccaatgataacatggccaatatttgctgaacaattttacaatgagaagctgcttgttgatgtttt |
26224350 |
T |
|
| Q |
239 |
gaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaag |
338 |
Q |
| |
|
|||||| || ||| || ||| |||||| ||| |||| ||| ||| |||| ||| ||| | | ||||||||||||| |||||||| |||||||| || |
|
|
| T |
26224351 |
gaagattggagtcgcggttggatcaaaagtgaaccagttttggcttagcattggtgaagaggtagtggtgagaagggaggagatagtgaaggctgttgag |
26224450 |
T |
|
| Q |
339 |
attttgatgggaagtggccaagag |
362 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
26224451 |
atattgatgggaagtggtcaagag |
26224474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 26088393 - 26088654
Alignment:
| Q |
22 |
caagattttgag-aaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggaggga |
120 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
26088393 |
caagattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaacttctgatattggatcatcctgcaacaggaggga |
26088492 |
T |
|
| Q |
121 |
ttgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaa |
220 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||| |||| | ||||||||||||||| |||||||||| || ||||||||||||||||| || |
|
|
| T |
26088493 |
ttgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcatggccaatatttgctgagcaattttacaatgaaaa |
26088592 |
T |
|
| Q |
221 |
gttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctgga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| |
|
|
| T |
26088593 |
gttgcttgttgatgttttgaagataggggtcccagttggagcaaaagtaaacgagttctgga |
26088654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 26112181 - 26112442
Alignment:
| Q |
22 |
caagattttgag-aaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggaggga |
120 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
26112181 |
caagattttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaacttctgatattggatcatcctgcaacaggaggga |
26112280 |
T |
|
| Q |
121 |
ttgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaa |
220 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| |||||| |||| | ||||||||||||||| |||||||||| || ||||||||||||||||| || |
|
|
| T |
26112281 |
ttgtgactcactgtggttggaactcgattcttgaaagcttgaatgctggtttgccaatgatcgcatggccaatatttgctgagcaattttacaatgaaaa |
26112380 |
T |
|
| Q |
221 |
gttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctgga |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| |
|
|
| T |
26112381 |
gttgcttgttgatgttttgaagataggggtcccagttggagcaaaagtaaacgagttctgga |
26112442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 26260501 - 26260706
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
26260501 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagctccttatattggatcaccctgcaacaggagggattgtgactcactgtggat |
26260600 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260601 |
ggaactcaattcttgaaagcttgaactcgggtttgccaatgattgcatggccaatgtttgctgagcaattttacaatgagaagttgcttgttgatgtttt |
26260700 |
T |
|
| Q |
239 |
gaagat |
244 |
Q |
| |
|
|||||| |
|
|
| T |
26260701 |
gaagat |
26260706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 26129178 - 26129531
Alignment:
| Q |
22 |
caagattttgag-aaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggaggga |
120 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||| | |
|
|
| T |
26129178 |
caagattttgaggaaaggatgaaagaaagaaaaaagggctatatcatatggaattgggcaccacagctccttatattggatcaccctgccataggaggaa |
26129277 |
T |
|
| Q |
121 |
ttgtgactcactgttgttggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaa |
220 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||| |||||| | || | |||||||||||||| |||||||||| | || || |||||||||||||| || |
|
|
| T |
26129278 |
ttgtgactcattgtggttggaactcaactctcgaaagcttaaatgctggtttgccaatgattacatggccaaggtttggcgatcaattttacaatgaaaa |
26129377 |
T |
|
| Q |
221 |
gttgcttgttgatgttttgaagataggggtccaagtaggagcaaaagaaaacaagttctggattaacatt---agtgtagatgaaatggtgagaagggaa |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||| || || | ||| ||| | | |||||| ||||||| |
|
|
| T |
26129378 |
gttgctcgttgatgttttgaagataggggtttcagtaggagcaaaagaaaacaagatgcggactagcactgaaagtaaagacgtagtggtgaaaagggaa |
26129477 |
T |
|
| Q |
318 |
gagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
26129478 |
gagatagcgaaggctgtagagattttgatgggaagcggccaagagagcaaagaa |
26129531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 26208040 - 26208245
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| ||| ||| |
|
|
| T |
26208040 |
atgaaagaaaacaaaaagggatatatcatatggaattgggcaccacagcttctcatattaggccaccctgcaacaggagggatagtgactcattgtggtt |
26208139 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
|||| |||||||| |||||| | | ||||| || ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26208140 |
ggaattcaattcttgaaagccttagtgttggtttacccatgattgcatggccaatgtttgctgagcaattttacaatgagaaattgcttgttgatgtttt |
26208239 |
T |
|
| Q |
239 |
gaagat |
244 |
Q |
| |
|
|||||| |
|
|
| T |
26208240 |
gaagat |
26208245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 26227601 - 26227808
Alignment:
| Q |
39 |
atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgtt |
138 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| | |||||||||||||| |||| | |||||||| ||| ||| |
|
|
| T |
26227601 |
atgaaagaaaacaaaaagggatatatcatatggaattgggcaccacaacttctcatattaggtcaccctgcaacagcaggggtagtgactcattgtggtt |
26227700 |
T |
|
| Q |
139 |
ggaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgtttt |
238 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||| || |||||||||||| || |||||| ||||||||||||||| | |||||| |||||| |
|
|
| T |
26227701 |
ggaactcaattcttgaaagcttgagtgttagtttgccaattattacatggccaatgtttgcggagcagttttacaatgagaagcttcttgtttttgtttt |
26227800 |
T |
|
| Q |
239 |
gaagatag |
246 |
Q |
| |
|
|||||||| |
|
|
| T |
26227801 |
gaagatag |
26227808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 26121220 - 26121276
Alignment:
| Q |
315 |
gaagagatagttaaggctgtgaagattttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26121220 |
gaagagatagcgaaggccgtagagattttaatgggaagtggccaagagagcaaagaa |
26121276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 40 - 371
Target Start/End: Original strand, 44903883 - 44904214
Alignment:
| Q |
40 |
tgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgatattggatcaccctgcaacaggagggattgtgactcactgttgttg |
139 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
44903883 |
tgaaagaaagcaacaagggctatatcatatggaattgggcaccgcagcttctcatattggatcaccctgcaacaggaggaattgtgactcactgtggttg |
44903982 |
T |
|
| Q |
140 |
gaactcaattctggaaagcgtgaactcgggtttgccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttgcttgttgatgttttg |
239 |
Q |
| |
|
|||||||| ||| |||||| | | ||||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44903983 |
gaactcaactcttgaaagcattagtgttggtttgccaatgatcacatggccaatgtttgctgaacaattttacaatgagaggttgcttgttgatgttttg |
44904082 |
T |
|
| Q |
240 |
aagataggggtccaagtaggagcaaaagaaaacaagttctggattaacattagtgtagatgaaatggtgagaagggaagagatagttaaggctgtgaaga |
339 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| |||| || | ||| |||||| | |||||| |||||||||||||| | ||||||| | ||| |
|
|
| T |
44904083 |
aagataggggtcccagttggagcaaaagaaaacaagttatggaatagctttactgtagaggcaatggttagaagggaagagattgcaaaggctgcggaga |
44904182 |
T |
|
| Q |
340 |
ttttgatgggaagtggccaagagagcaaagaa |
371 |
Q |
| |
|
||||| |||||| ||| ||||| ||||||||| |
|
|
| T |
44904183 |
ttttgttgggaaatggtcaagacagcaaagaa |
44904214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 10641 - 10691
Alignment:
| Q |
174 |
ccaatgatcacatggccaatgcctgaggagcaattttacaatgagaagttg |
224 |
Q |
| |
|
||||||||||| |||||||||| || || ||||||||||||||||||||| |
|
|
| T |
10641 |
ccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttg |
10691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 16908748 - 16908691
Alignment:
| Q |
38 |
aatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacagcttctgata |
95 |
Q |
| |
|
|||||||||||| || || |||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
16908748 |
aatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgata |
16908691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University