View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_14 (Length: 378)
Name: NF16040_low_14
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 92 - 350
Target Start/End: Complemental strand, 37965422 - 37965164
Alignment:
| Q |
92 |
tttctaaatcgagttaggttcatcatgctaaacgtgggttgatttacctttagttttttctaactatttcatttctttttcatgttccggaaaaccctaa |
191 |
Q |
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| T |
37965422 |
tttctaagtcgagttaggttcatcatactacacgtgggttggcttacctttagttttttctaactatttcatttcttctctatgttccaaaaaaccctaa |
37965323 |
T |
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| Q |
192 |
gttccaacaaatatttgaatatttatcataaaagatgtcaaccttgttttatattttcaaaagaatttaatttatataatacgagtgtaaatgtttttta |
291 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37965322 |
gttccaacaaatatttgaatatttgtcattaaagatgtcaaccttgttttatattttcaaaagaatttaatttatataatacgagtgtaaatatttttta |
37965223 |
T |
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| Q |
292 |
cactaccatttaattacaagtgtttgtttgtaatttgtttatggataattaaaatttga |
350 |
Q |
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| T |
37965222 |
cactgtcatttaattactagtgtttaatcgtaatttgttcatggataattaaaatttga |
37965164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 6347558 - 6347487
Alignment:
| Q |
300 |
tttaattacaagtgtttgtttgtaatttgtttatggataattaaaatttgaggtgagaggatgatgtctctg |
371 |
Q |
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| T |
6347558 |
tttaattgcaagtgtttatttgtaatttgtttatggataattaaaatttgaggtgagagaatgatgtctctg |
6347487 |
T |
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