View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16040_low_18 (Length: 309)

Name: NF16040_low_18
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16040_low_18
NF16040_low_18
[»] chr5 (1 HSPs)
chr5 (3-293)||(14182766-14183056)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 293
Target Start/End: Original strand, 14182766 - 14183056
Alignment:
Q  3 atcaactttctcaacaacctcaccctcttcacctttcctcaacaacccaccaaccccttcatttacatcctcatcaccaacctcttccttcatcttctcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14182766 atcaactttctcaacaacctcaccctcttcacctttcctcaacaacccaccaaccccttcatttacatcctcatcaccaacctcttccttcatcttctcc 14182865  T
Q  103 acaaaaacatcataaccctccaccagcttctcctcagcaaccctcaactgcttcacacactcatcatgcatatcctgcaccctcaacaaagcctggtaga 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  14182866 acaaaaacaccataaccctccaccagcttctcctcagcaaccctcaactgcttcacacactgatcatgcatatcctccaccctcaacaaagcctggtaga 14182965  T
Q  203 catgaacatcaacatcgcgagaagcagcgacggaagaagggttagggcgaggaccgagggtggtgagaaaagagagagtttgtgtgatgtt 293  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14182966 cgtgaacatcaacgtcgcgagaagcagcgacggaagaagggttagggcgaggaccgagggtggtaagaaaagagagagtttgtgtgatgtt 14183056  T

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