View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_19 (Length: 291)
Name: NF16040_low_19
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 2696843 - 2697103
Alignment:
| Q |
10 |
ttttttataggagaccaacatcgcaagactgcgatactcannnnnnntcaaaactacaattaaaccattttaatataagtgaaagagcaaaaaccaagtt |
109 |
Q |
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| T |
2696843 |
ttttttataggagaccaacatcgcaagactgtgatacttaggaggg-tcaaaactacaattaaaccattttaatataagtgaaagagcaaaaactaagtt |
2696941 |
T |
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| Q |
110 |
taaaaaatgagaccaatcaacggtctgcaaccacaattgtggtcgcaacataaagaattttgaagtctttgcgacgagattgcaagtgtggttatatatt |
209 |
Q |
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| T |
2696942 |
taaaaaatgagatcaattaa-ggtctccaaccacaattgtggtcgcaacataaagaattttgaagtctttgcgacgagattgcaaatgtggttatatatt |
2697040 |
T |
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| Q |
210 |
tgtctatttattgttttatatccggtctacaaccacaattatggttgcaacataaatactttg |
272 |
Q |
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| T |
2697041 |
tgtctatttatggttttatatcaggtttacaaccacgattatggttgcaacataaatactttg |
2697103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 271
Target Start/End: Original strand, 2705893 - 2706030
Alignment:
| Q |
132 |
gtctgcaaccacaattgtggtcgcaacataaagaattttgaagtctttgcgacgagattgcaagtgtggttatatatttgtctatttattgttttatatc |
231 |
Q |
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| T |
2705893 |
gtctgcaaccctaactatggtcgcaacataaagaattttgaagtctttacgaccggattgcaagtggggt--tacatttgtctatctatggttttatatt |
2705990 |
T |
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| Q |
232 |
cggtctacaaccacaattatggttgcaacataaatacttt |
271 |
Q |
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| T |
2705991 |
gggtctgcaaccacaattgtggtcgcaacataaaaacttt |
2706030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 2705992 - 2706024
Alignment:
| Q |
131 |
ggtctgcaaccacaattgtggtcgcaacataaa |
163 |
Q |
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| T |
2705992 |
ggtctgcaaccacaattgtggtcgcaacataaa |
2706024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2407398 - 2407352
Alignment:
| Q |
1 |
ttgttattgttttttataggagaccaacatcgcaagactgcgatact |
47 |
Q |
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| T |
2407398 |
ttgttattgttttttataggggaccaaaatcgcaagattgtgatact |
2407352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40352711 - 40352665
Alignment:
| Q |
1 |
ttgttattgttttttataggagaccaacatcgcaagactgcgatact |
47 |
Q |
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| T |
40352711 |
ttgttattgttttttataggcgaccaaaatcgcaagattgtgatact |
40352665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1780538 - 1780574
Alignment:
| Q |
1 |
ttgttattgttttttataggagaccaacatcgcaaga |
37 |
Q |
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| T |
1780538 |
ttgttattgttttttataggaggccaaaatcgcaaga |
1780574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7875756 - 7875720
Alignment:
| Q |
1 |
ttgttattgttttttataggagaccaacatcgcaaga |
37 |
Q |
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| T |
7875756 |
ttgttattgttttttataggggaccaaaatcgcaaga |
7875720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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