View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_20 (Length: 285)
Name: NF16040_low_20
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 54861215 - 54860946
Alignment:
| Q |
15 |
aagaacaacctttcacaagagaagttgtcaattctttcggcttcttccaccgtcatgtctatacaagcaggatgaaacctgaatcacaaatattatgctg |
114 |
Q |
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| T |
54861215 |
aagaacaac-tttcacaagagaagttgtcaattctttcggcttcttccaccgtcatgtctatacaagcaggatgaaacctgaatcacaaatattatgctg |
54861117 |
T |
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| Q |
115 |
aagattacattcacactaaaggcctctgttgcaaaacaagcaattttttatgtaaatcctcttcaaacaggtacataaacctcaaatatttcccatttac |
214 |
Q |
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| T |
54861116 |
aagattacattcacactaaaggcctctgttgcaaaacaagcaattttttatgtaaatcctcttcaaacaggtacataaacctcaaatatttcccatttac |
54861017 |
T |
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| Q |
215 |
catggtttagcaaataaactaatagaatcgaggtaggttattaaatcccacttaaaaatgatttattaata |
285 |
Q |
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| T |
54861016 |
catggtttagcaaataaactaatagaatcgagataggttattaaatcccacttaaaaatgatttattaata |
54860946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 54856402 - 54856298
Alignment:
| Q |
24 |
ctttcacaagagaagttgtcaattctttcggcttcttccaccgtcatgtctatacaagcaggatgaaacctgaatcacaaatattatgctgaagattaca |
123 |
Q |
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| T |
54856402 |
ctttcacaaaagaagtggtcaagtctttcggcttcctccacagtcatgtctatacaagcaggatgaaacctgaatcacaaatattatgcttaagattaca |
54856303 |
T |
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| Q |
124 |
ttcac |
128 |
Q |
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| T |
54856302 |
ttcac |
54856298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 54856275 - 54856184
Alignment:
| Q |
131 |
taaaggcctctgttgcaaaacaagcaattttttatgtaaatcctcttcaaacaggtacataaacctcaaatatttcccatttaccatggttta |
223 |
Q |
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| T |
54856275 |
taaaggcctctgttgcaaaaaaa-caatttttcatataaaccctcaacgaacaggtaccgaaacctcaaatcttttccatttatcatggttta |
54856184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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