View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16040_low_28 (Length: 208)

Name: NF16040_low_28
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16040_low_28
NF16040_low_28
[»] chr3 (6 HSPs)
chr3 (18-184)||(34527830-34527996)
chr3 (108-184)||(27634001-27634080)
chr3 (108-184)||(34518819-34518898)
chr3 (42-184)||(34371090-34371232)
chr3 (42-119)||(27627524-27627601)
chr3 (42-119)||(34513313-34513390)
[»] chr6 (4 HSPs)
chr6 (42-184)||(24486409-24486555)
chr6 (42-172)||(24472460-24472595)
chr6 (42-156)||(24468169-24468286)
chr6 (42-131)||(24485746-24485835)
[»] chr2 (2 HSPs)
chr2 (42-176)||(10527955-10528092)
chr2 (54-176)||(10534867-10534992)
[»] scaffold1215 (1 HSPs)
scaffold1215 (54-176)||(2055-2180)
[»] chr1 (1 HSPs)
chr1 (46-91)||(21991125-21991170)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 34527830 - 34527996
Alignment:
Q  18 ccttcttagaatcctcatgtcttcttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34527830 ccttcttagaatcctcatgtcttcttcattgatattagaaagttcaagattcattgaagtgaaattgtcaaaaacagaagaatcttcaggcacctcagta 34527929  T
Q  118 ggtgttgttgaagatgaactcaagttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34527930 ggtgttgttgaagatgaactcaagttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 34527996  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 27634001 - 27634080
Alignment:
Q  108 cacctcagtaggtgttgttgaagatgaa-ctcaa--gttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 184  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||||||||||| |||||||||||||||||||| ||||    
T  27634001 cacctcagtaggtgttgttgaagatgaagctccaatgttgttttcctctgtgcagttcgtcattgtcactcactcaacaa 27634080  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 34518819 - 34518898
Alignment:
Q  108 cacctcagtaggtgttgttgaagatgaa-ctcaa--gttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 184  Q
    |||||||||||||||||||||||||||| ||| |  |||||| ||||||||||| |||||||||||||||||||| ||||    
T  34518819 cacctcagtaggtgttgttgaagatgaagctccaatgttgttgtcctctgtgcagttcgtcattgtcactcactcaacaa 34518898  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 34371232 - 34371090
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctc 138  Q
    ||||| ||||| ||| |||||| | ||||||||||| |||||||||||| |||||   | |   ||||||||||| |||| |||||| ||||||   |||    
T  34371232 ttcatcgatatcagagagttcaggcttcattgaagccaaattgtcaaaatcagaactttgt---ggcacctcagttggtgctgttgatgatgaagctctc 34371136  T
Q  139 aagttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 184  Q
    | ||| |||||||||||||| || ||||||||||||||||| ||||    
T  34371135 atgttattttcctctgtgcagtttgtcattgtcactcactcaacaa 34371090  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 27627524 - 27627601
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtagg 119  Q
    |||||||| || ||| |||||||||||||||||||| ||||| |||||| | ||||||||||  |||||| |||||||    
T  27627524 ttcattgaaatcagatagttcaagattcattgaagccaaattttcaaaatctgaagaatcttgtggcaccacagtagg 27627601  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 34513313 - 34513390
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtagg 119  Q
    |||||||| || ||| |||||||||||||||||||| ||||| |||||| | ||||||||||  |||||| |||||||    
T  34513313 ttcattgaaatcagatagttcaagattcattgaagccaaattttcaaaatctgaagaatcttgtggcaccacagtagg 34513390  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 24486555 - 24486409
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgt-caaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ct 137  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||| |||||||||||||| |||  |||| |||||||||||||||||||||  ||   ||    
T  24486555 ttcattgatatcagaaagttcaagcttcattgaagaaaaattgtacaaaaacagaagaaccttgtggcatctcagtaggtgttgttgaagacaaagcgct 24486456  T
Q  138 caagttgttttcctctgtgcaattcgtcattgtcactcactcgacaa 184  Q
    || ||||||||||||| |||| ||| |||||||||||| ||| ||||    
T  24486455 cacgttgttttcctctatgcagttcttcattgtcactcgctcaacaa 24486409  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 24472595 - 24472460
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaa--acagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---c 136  Q
    |||||||||||||||||||||||| ||||||||||  |||  || ||||  || ||| || |||  |||| |||||||||||||||||||||  ||   |    
T  24472595 ttcattgatattagaaagttcaagcttcattgaagaaaaaccgtaaaaagaacggaaaaaccttggggcatctcagtaggtgttgttgaagacaaagcgc 24472496  T
Q  137 tcaagttgttttcctctgtgcaattcgtcattgtca 172  Q
    ||| |||||||||||||||||||||| |||||||||    
T  24472495 tcacgttgttttcctctgtgcaattcatcattgtca 24472460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 24468286 - 24468169
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctc 138  Q
    ||||||||||| | |||||||||| |||||||| || ||||||| |||||| |||||| |||   ||| ||||||| |||||||| ||||||||   |||    
T  24468286 ttcattgatatcataaagttcaagcttcattgacgcaaaattgtaaaaaacggaagaaccttgttgcatctcagtaagtgttgtttaagatgaagcgctc 24468187  T
Q  139 aagttgttttcctctgtg 156  Q
      ||||||||||||||||    
T  24468186 tcgttgttttcctctgtg 24468169  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 24485835 - 24485746
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaaga 131  Q
    ||||||||||| |||||||||||| ||||||||||| ||| ||| |||||| ||| |  |||  |||| || ||||||||||||||||||    
T  24485835 ttcattgatatcagaaagttcaagcttcattgaagcaaaactgtaaaaaacggaaaagccttgtggcatcttagtaggtgttgttgaaga 24485746  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 10527955 - 10528092
Alignment:
Q  42 ttcattgatattagaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctc 138  Q
    ||||| ||||| |||||||| ||| ||||| ||| | ||||||||||||||||||||| |||  ||||||||||||||||||| || |||||||   | |    
T  10527955 ttcatagatatcagaaagtttaagcttcatcgaatcaaaattgtcaaaaacagaagaaccttggggcacctcagtaggtgttgctggagatgaagtgcgc 10528054  T
Q  139 aagttgttttcctctgtgcaattcgtcattgtcactca 176  Q
    | |||||||||||||||| | |||||||||||||||||    
T  10528055 atgttgttttcctctgtgtagttcgtcattgtcactca 10528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 10534867 - 10534992
Alignment:
Q  54 agaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcc 150  Q
    |||||||| ||| ||||| ||| | ||||||| ||||||||||||| |||  | ||||||||||||||||| || |||||||   |||| ||||||||||    
T  10534867 agaaagtttaagcttcatcgaatcaaaattgttaaaaacagaagaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcc 10534966  T
Q  151 tctgtgcaattcgtcattgtcactca 176  Q
    |||||| | |||||||||||||||||    
T  10534967 tctgtgtagttcgtcattgtcactca 10534992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 2055 - 2180
Alignment:
Q  54 agaaagttcaagattcattgaagcgaaattgtcaaaaacagaagaatcttcaggcacctcagtaggtgttgttgaagatgaa---ctcaagttgttttcc 150  Q
    |||||||| ||| ||||| ||| | ||||||| ||||||||||||| |||  | ||||||||||||||||| || |||||||   |||| ||||||||||    
T  2055 agaaagtttaagcttcatcgaatcaaaattgttaaaaacagaagaaccttgtgtcacctcagtaggtgttggtggagatgaagagctcatgttgttttcc 2154  T
Q  151 tctgtgcaattcgtcattgtcactca 176  Q
    |||||| | |||||||||||||||||    
T  2155 tctgtgtagttcgtcattgtcactca 2180  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 21991125 - 21991170
Alignment:
Q  46 ttgatattagaaagttcaagattcattgaagcgaaattgtcaaaaa 91  Q
    |||||||||||||| ||||||||||||||||  | |||||||||||    
T  21991125 ttgatattagaaagctcaagattcattgaagacagattgtcaaaaa 21991170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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