View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_29 (Length: 202)
Name: NF16040_low_29
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 45981152 - 45980970
Alignment:
| Q |
1 |
atgaaacaaataatgtcaacaatttcttggagctctgcactattgcaagtaggaaagaatgaatttgttttttctgattgaaattattaacaaactatta |
100 |
Q |
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| T |
45981152 |
atgaaacaaataatgtcaacaatttcttggagctctgcactattgcaagtaggaaagaatgaatttgttttttctgattgaaattattaacaaactatta |
45981053 |
T |
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| Q |
101 |
gctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagattatgacaaccgcctca |
183 |
Q |
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| T |
45981052 |
gctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagattatgacaaccgcctca |
45980970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 45857132 - 45857313
Alignment:
| Q |
1 |
atgaaacaaataatgtcaacaatttcttggagctctgcactattgcaagtaggaaagaatgaatttgttttttctgattgaaattattaacaaactatta |
100 |
Q |
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| T |
45857132 |
atgaaacaaataatgtcaacaatttcttggagctctgcactattgcaagtaggaaagaatgaatttgtttt-tctgattgaaattattaacaaattatta |
45857230 |
T |
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| Q |
101 |
gctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagattatgacaaccgcctca |
183 |
Q |
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| T |
45857231 |
gctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatcatgataactgcctca |
45857313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 45869685 - 45869866
Alignment:
| Q |
1 |
atgaaacaaataatgtcaacaatttcttggagctctgcactattgcaagtaggaaagaatgaatttgttttttctgattgaaattattaacaaactatta |
100 |
Q |
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| T |
45869685 |
atgaaacaaataatgtcaaaaatttcctggagctctgcactattgcaagcaggaaagaatgaatttgttttttctgattgaaattattaacaaattatta |
45869784 |
T |
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| Q |
101 |
gctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagattatgacaaccgcctca |
183 |
Q |
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| T |
45869785 |
gctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatcatgactaccgcctca |
45869866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 45970128 - 45970016
Alignment:
| Q |
70 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
169 |
Q |
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| T |
45970128 |
ttttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatta |
45970029 |
T |
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| Q |
170 |
tgacaaccgcctc |
182 |
Q |
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| T |
45970028 |
tgacaaccccctc |
45970016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 45974645 - 45974538
Alignment:
| Q |
70 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
169 |
Q |
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| T |
45974645 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
45974546 |
T |
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| Q |
170 |
tgacaacc |
177 |
Q |
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| T |
45974545 |
tgacaacc |
45974538 |
T |
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