View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_3 (Length: 559)
Name: NF16040_low_3
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 15 - 542
Target Start/End: Original strand, 52795648 - 52796173
Alignment:
| Q |
15 |
gaatattaaaggtaaagagagacggaaataagaaaaatttataccatctttatttgtagagatagatattgacatctatttnnnnnnntatatatgattc |
114 |
Q |
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| T |
52795648 |
gaatattaaaggtaaaaagagacggaaataagaaaaatttgtaccatctttatttgtagagaccgatattgacatctatttaaaaaaa-atatatgattc |
52795746 |
T |
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| Q |
115 |
atactnnnnnnnnttacattagtgagagaaaacttcataaaattttgtgacaaatgaattagagagtaacttcattttttcatcattaatgttacttatt |
214 |
Q |
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| T |
52795747 |
atactaaaaaaaattacattagtgagagaaaacttcataaaattttgtgacaaatgaatcagagagtaacttcattttttcatcattaatgttacttatt |
52795846 |
T |
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| Q |
215 |
tcagtatatgttgacagcaattgatccatgtaatcaacattgattgataagataattgaggtttggttaaattttgcaaagtatgcacatattttagagt |
314 |
Q |
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| T |
52795847 |
tcagtatatgttgacagcaactgatccatgtaatcaacat-gattgataagataattgaggtttggttaaattttgcaaagtatgcacatattttagagt |
52795945 |
T |
|
| Q |
315 |
ataaaaaatcattttttgggtaaatattatacatatgaaataatattccccattggctgatatagatgattttgtttggtggtgccaggaagcaattata |
414 |
Q |
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| T |
52795946 |
ataaaaaaacattttttgggtaaatattatacatatgaaataatattccccattggctgatatagatgattttgtttggtggtgccaggaagcaattata |
52796045 |
T |
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| Q |
415 |
taagaaggaaaggtgccctataactaaatcaatataatcattagcagacgaagtaaatatggaatattacggggttgtgggtttggtactagccgttttg |
514 |
Q |
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| T |
52796046 |
taagaaggaaaggtgccctataactaaatcaatataatcattagcagacgaagtaaatatggaatattacggggttgtgggtttggtactagccgttttg |
52796145 |
T |
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| Q |
515 |
gtatggatgtggttggcaatggtgatga |
542 |
Q |
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| T |
52796146 |
gtatggatttggttggcaatggtgatga |
52796173 |
T |
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