View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16040_low_5 (Length: 513)
Name: NF16040_low_5
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16040_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 46064012 - 46063579
Alignment:
| Q |
10 |
attattcttcatcttttatcttttatcaccatccttgaccaatatttattcatatctataggttgattgtgatgaacataaaagcgtttgcactaagtat |
109 |
Q |
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| T |
46064012 |
attattcttcatcttttatcttttatcaccatccttgaccaatatttattcatatctataggttgattgtgatgaacataaaagcgtttgcactaagtat |
46063913 |
T |
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| Q |
110 |
ggggtttctggttaccctacaataaagtggtttcccaagggatcactaaatccaaaaaagtgagcactttgtccattttctttcctttcaaacatctctt |
209 |
Q |
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| T |
46063912 |
ggggtttctggttaccctacaataaagtggtttcccaagggatcactaaatccaaaaaagtgagcactttgtccattttctttcctttcaaacatctctt |
46063813 |
T |
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| Q |
210 |
tttaccatagaaaatttgagagattttcatgctctttacttgttggtattgtaatgtcaaccgctataaccatgaacaaagaatgttttctttaggtttg |
309 |
Q |
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| T |
46063812 |
tttaccatagaaaatttgagagatattcatgctctttacttgttggtattgtaatgtcaaccgctataaccatgaacaaagaatgttttctttaggtttg |
46063713 |
T |
|
| Q |
310 |
aaggcgcacgtaccgctgaagcccttgctgctttcctaaatattgaaggaggtatttaagtgaattgttac---------tattgagttatgttgttgtt |
400 |
Q |
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| T |
46063712 |
aaggcgcacgtaccgctgaagcccttgctgctttcctaaatattgaaggaggtatttaagtgaattgttacttttctacttattgagttatgttgttgtt |
46063613 |
T |
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| Q |
401 |
tgctttctatttattcattctcttattgtgcatg |
434 |
Q |
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| T |
46063612 |
tgctttctatttattcattctcttattgtgcatg |
46063579 |
T |
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