View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16040_low_8 (Length: 475)

Name: NF16040_low_8
Description: NF16040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16040_low_8
NF16040_low_8
[»] chr6 (3 HSPs)
chr6 (10-458)||(32925351-32925799)
chr6 (73-159)||(32920360-32920446)
chr6 (10-75)||(32920269-32920334)
[»] chr8 (3 HSPs)
chr8 (388-429)||(10689504-10689545)
chr8 (354-422)||(23388103-23388171)
chr8 (239-275)||(25334611-25334647)
[»] scaffold0027 (1 HSPs)
scaffold0027 (212-276)||(54780-54844)
[»] chr4 (2 HSPs)
chr4 (354-428)||(17507133-17507208)
chr4 (291-349)||(45734673-45734730)
[»] chr3 (1 HSPs)
chr3 (388-422)||(10922472-10922506)


Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Original strand, 32925351 - 32925799
Alignment:
Q  10 gatgaagctagaagactaaacataatcagcgaatcaacctacaatagtattcttgtactgcagaagttggatccatttctgacctcacatcaaagcatga 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32925351 gatgaagctagaagactaaacataatcagtgaatcaacctacaatagcattcttgtactgaagaagttggatccatttctgacctcacatcaaagcatga 32925450  T
Q  110 agttgaaaatgctacctcttctggcaattcgcttcagcccgggaagtgcttgatagcgcagcagtaattacttgcagtgcaagtaatcagttttcctaag 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32925451 agttgaaaatgctacctcttctggcaattcgcttcagccggggcagtgcttgatagcgcagcagtaattacttgcagtgcaagtaatcagttttcctaag 32925550  T
Q  210 agaattgagagagaaaaagagaatgttacattgattgcaaacttgttattctcattagcaatgaaaggggtttatatacatgcttattaacattacttgc 309  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32925551 agaattgagagagaaaaacagaatgttccattgattgcaaacttgttattctcatcagcaatgaaaggggtttatatacatgcttattaacattacttgc 32925650  T
Q  310 ttactaagcaatcaaaacaaaactaactaactttgctaacagttataacaaactaagtaactactttctatcatatccaactttgagtttatctcaacta 409  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32925651 ttactaagcaatcaaaacaaaactaactaactttgctaacagctataacaaactaagtaacaactttctatcatatccaactttgagtttatctcaacta 32925750  T
Q  410 acttgaattaaaactaacagtgatgttacttcatggatcgattcatgct 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32925751 acttgaattaaaactaacagtgatgttacttcatggatcgattcatgct 32925799  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 32920360 - 32920446
Alignment:
Q  73 aagttggatccatttctgacctcacatcaaagcatgaagttgaaaatgctacctcttctggcaattcgcttcagcccgggaagtgct 159  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  32920360 aagttggagccatttctgacctcgcatcaaagcatgaagttgaaaatgctacctcttctggcaattcgcttcagccagggcagtgct 32920446  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 32920269 - 32920334
Alignment:
Q  10 gatgaagctagaagactaaacataatcagcgaatcaacctacaatagtattcttgtactgcagaag 75  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||| ||||| ||||||||||||    
T  32920269 gatgaagctaaaagactaaacataatcagtgaaccaaccttcaatagcattctcgtactgcagaag 32920334  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 10689504 - 10689545
Alignment:
Q  388 aactttgagtttatctcaactaacttgaattaaaactaacag 429  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10689504 aactttgagtttatctcaactaacttgaattaaaactaacag 10689545  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 23388103 - 23388171
Alignment:
Q  354 ataacaaactaagtaactactttctatcatatccaactttgagtttatctcaactaacttgaattaaaa 422  Q
    |||||||||||  ||| || |||||||| || | ||||| ||||||||||||||| |||||||||||||    
T  23388103 ataacaaactatataagtattttctatcttaactaacttcgagtttatctcaacttacttgaattaaaa 23388171  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 25334647 - 25334611
Alignment:
Q  239 attgattgcaaacttgttattctcattagcaatgaaa 275  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  25334647 attgattgaaaacttgttattcacattagcaatgaaa 25334611  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 54780 - 54844
Alignment:
Q  212 aattgagagagaaaaagagaatgttacattgattgcaaacttgttattctcattagcaatgaaag 276  Q
    ||||||||||||| |||||||||    |||||||| |||||||||||||||||||| ||||||||    
T  54780 aattgagagagaagaagagaatgaactattgattgtaaacttgttattctcattaggaatgaaag 54844  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 17507133 - 17507208
Alignment:
Q  354 ataacaaactaagtaactactttctatcatatccaactttgagtttatctcaactaacttgaatta-aaactaaca 428  Q
    ||||||||| |  ||||||||||||||| || | |||| | ||||||||||||||||||||||||| |||||||||    
T  17507133 ataacaaaccatctaactactttctatcttaactaactctaagtttatctcaactaacttgaattataaactaaca 17507208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 45734673 - 45734730
Alignment:
Q  291 gcttattaacattacttgcttactaagcaatcaaaacaaaactaactaactttgctaac 349  Q
    ||||||| |||| ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  45734673 gcttatttacataacttgcttagtaagcaatcaaaacaaacttaactaa-tttgctaac 45734730  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 10922506 - 10922472
Alignment:
Q  388 aactttgagtttatctcaactaacttgaattaaaa 422  Q
    |||||||||||||||||||||||||| ||||||||    
T  10922506 aactttgagtttatctcaactaactttaattaaaa 10922472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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