View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_high_17 (Length: 247)
Name: NF16041_high_17
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 43664425 - 43664559
Alignment:
| Q |
82 |
atttgaagttatatactttttctataataattaatcaaacataattataccctttttacttattttcaaatacaaaaaattgtggttgtaagtttatgac |
181 |
Q |
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| T |
43664425 |
atttaaagttatatactttttctatac-aattaatcaaacataattataccctttttacttattttcaaatacaaaaaactgtggttgtaagtttatgac |
43664523 |
T |
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| Q |
182 |
agtaatcatttcaaaacctaaaacaaattgcatcat |
217 |
Q |
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| T |
43664524 |
agtaatcatttcaaaacctaaaacaaattgcatcat |
43664559 |
T |
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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43664276 - 43664361
Alignment:
| Q |
1 |
ttgaatcagtggattactggttaaataaaaatatatgcatgattacatattaaaataggcacacaattataaccatagtcgatttg |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43664276 |
ttgaatcagtggattactggttaaataaaaatatatgcatgattacatattaaaataggcacacaattataaccatagtcgatttg |
43664361 |
T |
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