View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_high_2 (Length: 528)
Name: NF16041_high_2
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 511
Target Start/End: Complemental strand, 8805502 - 8805006
Alignment:
| Q |
15 |
cataggacaaaagcttggtttacattggtataggagattgaatattgcaacagaaatagctagtactattgcatcgttacattatgataaatctcctcca |
114 |
Q |
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| T |
8805502 |
cataggacaaaagcttggtttacattggtataggagattgaatattgcaacagaaatagctagtactattgcattgttacattatgataaatctcctcca |
8805403 |
T |
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| Q |
115 |
atattccatcataacctaaagtctagttgcatcttcctaggtgatgatttttctgtcaagattgcaggatttggaatacataattctgatgttaataatt |
214 |
Q |
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| T |
8805402 |
atattccatcataacctaaagtctagttgcatcttcctaggtgatgatttttctgtcaagattgcaggatttggaatacataattctgatgttaataatt |
8805303 |
T |
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| Q |
215 |
atgattacaagaattgtgaaactcgcgaacgctttcggttgtgcaaaaatgatgtctatgacataggtttgttgctactcgagattatctacggaacaaa |
314 |
Q |
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| T |
8805302 |
atgattacaagaattgtgaaactcgcgaacactttcgcttgtgcaaaaatgatgtctacgacataggtttgttgctactcgagattatctacggaacaaa |
8805203 |
T |
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| Q |
315 |
tcagttggactcacctacattagccttgaagaaaattagggatggaaagatcgaagaaattgtcgatccacttcttaattattacgaacaaccgcgtcat |
414 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805202 |
tcaattggactcacctacattagccttgaagaaaattagggatggaaagatcgaagaaattgtcgatccacttcttaattattacgaacaaccgcgtcat |
8805103 |
T |
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| Q |
415 |
tgtcaagaacagattcagatcattgctgaccttgccacaagatgttttctgtttagtggagatggaaagatgggaatgattgatgttgctagggaat |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805102 |
tgtcaagaacagattcagatcattgctgaccttgccacaagatgttttctgtttagtggagatggaaagatgggaatgattgatgttgctagggaat |
8805006 |
T |
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