View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_high_22 (Length: 204)
Name: NF16041_high_22
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 43470183 - 43470359
Alignment:
| Q |
12 |
aaattatacttagtccttgctacttaagaggaaaccatgttataaaacactaagaaaaaataaagtatcagaagattgttacttgtcaatgcttgtgtta |
111 |
Q |
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| T |
43470183 |
aaattatatttagtccttgctacttaagaggaaaccatgttataaaacactaagaaaaaataaagtatcagaagattgttacttgtcaatgcttgtgtta |
43470282 |
T |
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| Q |
112 |
acaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaatt |
188 |
Q |
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| T |
43470283 |
acaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaatt |
43470359 |
T |
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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 10642559 - 10642469
Alignment:
| Q |
98 |
caatgcttgtgttaacaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaatt |
188 |
Q |
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| T |
10642559 |
caatgcttgtgttaacaaaaagtagacaaactagatcacagtgtagggataaggtagattaacctctgacattcatgaactataatgaatt |
10642469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 32713270 - 32713360
Alignment:
| Q |
98 |
caatgcttgtgttaacaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaatt |
188 |
Q |
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| T |
32713270 |
caatgcttgtattaacaaaaagtagacaaactagatcacagtgtaggaataaggtagattaacctctgacattcatgaactataatgaatt |
32713360 |
T |
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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 23924090 - 23924180
Alignment:
| Q |
98 |
caatgcttgtgttaacaaaaagtagacaaattagatcacaatgttgggataaggtagattaacctctgacattcatgaaccataatgaatt |
188 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
23924090 |
caatgcttgtgttaacaaaaagtagacaaactagatcacagtgtagggataaggtagattaacttctgacattcatgaactataatgaatt |
23924180 |
T |
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