View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_high_3 (Length: 522)
Name: NF16041_high_3
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 14721030 - 14721444
Alignment:
| Q |
18 |
aaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatacttta |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
14721030 |
aaatttagttttcaaggtagacatctcaaaagcttttaatacattggagtggaaattgcttcttagtgtattaag----tttggttttaatgatacttta |
14721125 |
T |
|
| Q |
118 |
tgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| | |
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| T |
14721126 |
tgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaaccagaatgattattttcattgtaagagaaaagtcaggcagg |
14721225 |
T |
|
| Q |
218 |
gtgaccccctgtctcttcttctcttctgtattgttgaggatgtgctcagcatgagtatttccaatctggtgaatcaaggaattgtggaacacattaaagg |
317 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
14721226 |
gtgaccccctgtctcctcttctcttttgtattgttgaggatgtgctcatcatgagtatttccaatctagtgaatcaatgaattgtggaacgcattaaagg |
14721325 |
T |
|
| Q |
318 |
ttcgagataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagc |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
14721326 |
ttcaagataaacacacgttccatctcactctttatatgctgacgacatcaggatattttttgcaaaggtaaaatctcctccattcatgctcttatgtagc |
14721425 |
T |
|
| Q |
418 |
ttttcaactcttatgctca |
436 |
Q |
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||||||||||||||||||| |
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| T |
14721426 |
ttttcaactcttatgctca |
14721444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 190 - 439
Target Start/End: Complemental strand, 28186641 - 28186394
Alignment:
| Q |
190 |
tttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctcttctgtattgttgaggatgtgctcagcatgagtatttccaatctggtga |
289 |
Q |
| |
|
|||||||| |||||| || ||||||| ||||||||| |||| | |||||| |||||||||| ||||||||||||||||| ||| || ||||||| ||| |
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| T |
28186641 |
tttcattgcaagagagaagtcaggcagggtgaccccttgtcccctcttcttttctgtattgctgaggatgtgctcagcaggagcatcaccaatcttgtgc |
28186542 |
T |
|
| Q |
290 |
atcaaggaattgtggaacacattaaaggttcgagataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaa |
389 |
Q |
| |
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| ||||||| ||||| | || |||||||| |||| |||||| ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
28186541 |
aacaaggaaaggtggagcttatcaaaggttcaagatcaacacatgttccttctcattctttatatgctgacgacattatgata--ttttgcaaaggtaaa |
28186444 |
T |
|
| Q |
390 |
atctcttccattcatgctcttatgcagcttttcaactcttatgctcaagc |
439 |
Q |
| |
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|| || | |||||||||||| |||| ||||||||||| |||| |||||| |
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| T |
28186443 |
atttcctatattcatgctcttctgcaacttttcaactcatatgatcaagc |
28186394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 12220640 - 12220525
Alignment:
| Q |
322 |
agataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagctttt |
421 |
Q |
| |
|
|||| |||||| ||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| ||||| |
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| T |
12220640 |
agatcaacacatgttccttctcattccttatatgctgacgacattatgatatttt--gcaaaggtaaaatctcctctattcatgctcttatgcaactttt |
12220543 |
T |
|
| Q |
422 |
caactcttatgctcaagc |
439 |
Q |
| |
|
|||||| ||||||||||| |
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| T |
12220542 |
caactcatatgctcaagc |
12220525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 28186779 - 28186697
Alignment:
| Q |
19 |
aatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttgg |
101 |
Q |
| |
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|||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||| ||| ||||| |||||||| |
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|
| T |
28186779 |
aatttacctttcaaggttgacatctcaaaggcttttgacacattggagtggaaatttcttcttactgtgttaagaaagtttgg |
28186697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 12115073 - 12115185
Alignment:
| Q |
148 |
gctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctcttcttctcttctgta |
247 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||| | |||| ||||| ||||| || |||| |||||||| || | |
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| T |
12115073 |
gctactctttcaatatctgtaaatggtaagcaaaatggttattttcattgtaagaggggagtcagacaaggagacccgctatctccccttctcttttgca |
12115172 |
T |
|
| Q |
248 |
ttgttgaggatgt |
260 |
Q |
| |
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||| ||| ||||| |
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| T |
12115173 |
ttgctgaagatgt |
12115185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 19216073 - 19216005
Alignment:
| Q |
343 |
cactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatg |
413 |
Q |
| |
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|||||| ||||||| || |||||||||||| || |||||||||| ||||||||| ||||| ||||||||| |
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| T |
19216073 |
cactctctatatgcagatgacatcatgata--ttctgcaaaggtagaatctcttctattcaggctcttatg |
19216005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 7573449 - 7573866
Alignment:
| Q |
19 |
aatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttat |
118 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | |||||| | | ||||| | |||||||||| | || |||| |||||||| || ||||||| || | |
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|
| T |
7573449 |
aatttggctttcaaggttgacatctcaaaggtttttgacacgctcgagtggacatttcttctttg-gtgctaagaaagtttggattcaatgatagatttt |
7573547 |
T |
|
| Q |
119 |
gttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaagg |
218 |
Q |
| |
|
| || ||||| | ||||| |||| | ||||||||||||||||| |||||||||||| || ||||| || || ||||| |||||| | ||||||| || |
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|
| T |
7573548 |
gctcctggatcaacacaattctaaactctgctactctttcaatctctgtcaatggcaaacaaaatggatacttccattgcaagagaggagtcaggcaggg |
7573647 |
T |
|
| Q |
219 |
tgaccccctgtctcttcttctcttctgtattgttgaggatgtgctcagcatgagtatttccaatctggtgaatcaaggaattgtggaacacattaaaggt |
318 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| ||||||||||||||||| ||||| ||||||| ||| | || ||| |||| | || |||||| |
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|
| T |
7573648 |
tgaccccttgtcccttcttcttttctgtattgctgaggatgtgctcagcagaagtatcaccaatcttgtgcaacagggatagttggagcttatcaaaggt |
7573747 |
T |
|
| Q |
319 |
tcgagataaacacacgttccatctcactctttatatgctgacgacatcatgatattttttgcaaaggtaaaatctcttccattcatgctcttatgcagct |
418 |
Q |
| |
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|| |||| |||||| ||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||||| || |
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| T |
7573748 |
tcaagatcaacacatgttccttctcattccttatatgctgacgacattatgatatttt--gcaaaggtaaaatctcctctattcatgctcttatgcaact |
7573845 |
T |
|
| Q |
419 |
tttcaactcttatgctcaagc |
439 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
7573846 |
tttcaactcatatgctcaagc |
7573866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 22562776 - 22562924
Alignment:
| Q |
118 |
tgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaag |
217 |
Q |
| |
|
||||||||||||||||| ||| | || | ||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| ||| | | || |||| |
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|
| T |
22562776 |
tgttcttggattcataccatcctcaagtctgctactctctctatctctgttaatggcaagcagaatggttactttcattgtaaaagaggagtgagacaag |
22562875 |
T |
|
| Q |
218 |
gtgaccccctgtctcttcttctcttctgtattgttgaggatgtgctcag |
266 |
Q |
| |
|
|||| || || || | ||||||||| ||||| ||||||||| ||||| |
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|
| T |
22562876 |
gtgatcctctttcacctcttctcttttgtatatctgaggatgttctcag |
22562924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 19282664 - 19282606
Alignment:
| Q |
375 |
ttttgcaaaggtaaaatctcttccattcatgctcttatgcagcttttcaactcttatgc |
433 |
Q |
| |
|
|||||||||||||| || | || || |||||||||||||||||||||||||||||||| |
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|
| T |
19282664 |
ttttgcaaaggtaagatagcatcaatccatgctcttatgcagcttttcaactcttatgc |
19282606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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