View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16041_low_1 (Length: 607)

Name: NF16041_low_1
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16041_low_1
NF16041_low_1
[»] chr8 (12 HSPs)
chr8 (22-595)||(31651702-31652274)
chr8 (22-412)||(31656687-31657078)
chr8 (22-198)||(31637883-31638059)
chr8 (236-416)||(31630337-31630517)
chr8 (23-155)||(31630604-31630736)
chr8 (23-159)||(31646626-31646762)
chr8 (316-414)||(31646350-31646448)
chr8 (239-416)||(31637663-31637839)
chr8 (447-591)||(31656485-31656631)
chr8 (485-592)||(31630139-31630248)
chr8 (542-590)||(31637411-31637459)
chr8 (546-592)||(31646246-31646292)
[»] chr5 (2 HSPs)
chr5 (237-387)||(9105009-9105159)
chr5 (28-158)||(9104799-9104929)


Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 22 - 595
Target Start/End: Complemental strand, 31652274 - 31651702
Alignment:
Q  22 tacccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652274 tacccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacac 31652175  T
Q  122 cgtctcacccccttcttcgacatctgaactgtatcatcgaattacnnnnnnngtgaactccaatatcaacttcatatcaaagatagttgaagcnnnnnnn 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||           
T  31652174 cgtctcacccccttcttcgacatctgaactgtatcatcgaattacaaaaaaagtgaactccaatatcaacttcatatcaaaaatagttgaagcaaaaaaa 31652075  T
Q  222 tgaatgacaccgacgtcacttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgagg 321  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31652074 tgaatgacactgacgtcacttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgagg 31651975  T
Q  322 ttcatacttttgtccaacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaagtctaga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651974 ttcatacttttgtccaacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaagtctaga 31651875  T
Q  422 tggccaagacaacggaaaatattctactttgttgatatatcgttggatcataaaacatttgccggagcatcaaacattaattttatgaacaatgggaaaa 521  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  31651874 tggccaagacaacggaaaatattctactttggtgatatatcgttggatcataaaacatttgctggagcatcaaaccttaattttatgaacaat-ggaaaa 31651776  T
Q  522 acaaaagggagaaagaacacaacacacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttc 595  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31651775 acataagggagaatgaacacaacacacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttc 31651702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 22 - 412
Target Start/End: Complemental strand, 31657078 - 31656687
Alignment:
Q  22 tacccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacac 121  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31657078 tacccatctttggcttaattgacagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttgggaacac 31656979  T
Q  122 cgtctcacccccttcttcgacatctgaactgtatcatcgaattacnnnnnnn--gtgaactccaatatcaacttcatatcaaagatagttgaagcnnnnn 219  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||         |||||| |||||||||||||| |||||| |||| |||||||         
T  31656978 cgtctcacccccttcttcaacatccgaactgtattatcgaattacaaaaaaaaagtgaacaccaatatcaacttcgtatcaacgataattgaagccaaca 31656879  T
Q  220 nntgaatgacaccgacgtcacttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatga 319  Q
      ||||||||||  | |||||||||||||||||||||||||||||||| |||||||| ||||   |||||||||| ||||||| ||||||||||||||||    
T  31656878 a-tgaatgacactaaagtcacttacaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatga 31656780  T
Q  320 ggttcatacttttgtccaacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgttt 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  31656779 ggttcatacttttgtccaacttcataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt 31656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 31638059 - 31637883
Alignment:
Q  22 tacccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacac 121  Q
    |||||||||||||||||||||| |||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  31638059 tacccatctttggcttaattgaaagtcccttttttccacaatcagaaagctcattccaccaaggcacagagctaaaatttcccttagcagatggaaacac 31637960  T
Q  122 cgtctcacccccttcttcgacatctgaactgtatcatcgaattacnnnnnnngtgaactccaatatcaacttcatat 198  Q
     ||||||||||||||||| ||||||||||||||||||| || |||       ||| || ||||||||||||||||||    
T  31637959 tgtctcacccccttcttcaacatctgaactgtatcatcaaaatacaagaagtgtgcacaccaatatcaacttcatat 31637883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 31630517 - 31630337
Alignment:
Q  236 gtcacttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtc 335  Q
    |||||||||||||||||||||||||||||||||||||||||  |||    |||| || ||  ||||  |||||||||  ||||||| |||||||||||||    
T  31630517 gtcacttacaggtacatcagcattgttgctatacgctgacctccattcacagtattataatcatccgcaaagtagtctaaatgaggatcatacttttgtc 31630418  T
Q  336 caacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaagt 416  Q
    ||||||||||| |||||||||||||| |||| || | ||||||||| |||||||||| | |||||||||||||||||||||    
T  31630417 caacttcataacggagaacattaaagctttcgccgttctctgcataatgtgaaacacggctcaagtaatggttgtttaagt 31630337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 31630736 - 31630604
Alignment:
Q  23 acccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacacc 122  Q
    ||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||  ||| |||||     
T  31630736 acccatctttggcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaatattccccttggcagctgggaacact 31630637  T
Q  123 gtctcacccccttcttcgacatctgaactgtat 155  Q
    ||||||||||||||||| |||||||||||||||    
T  31630636 gtctcacccccttcttcaacatctgaactgtat 31630604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 31646762 - 31646626
Alignment:
Q  23 acccatctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacacc 122  Q
    ||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||  |||||||||     
T  31646762 acccatctttggcttaattgaaagtcctttttttccacaatccgaaagctcattccaccaaggcacagagctaaaatttccctcagcaaatggaaacact 31646663  T
Q  123 gtctcacccccttcttcgacatctgaactgtatcatc 159  Q
    ||||||||||||||||| |||| |||| |||||||||    
T  31646662 gtctcacccccttcttcaacatttgaattgtatcatc 31646626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 316 - 414
Target Start/End: Complemental strand, 31646448 - 31646350
Alignment:
Q  316 atgaggttcatacttttgtccaacttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaa 414  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||| ||||||||||||||||||| ||   || ||||||||||||||    
T  31646448 atgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgtttaa 31646350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 31637839 - 31637663
Alignment:
Q  239 acttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtccaa 338  Q
    |||||||||||||||| ||||||||||||||||| |||| |||   ||||| |||    |||   ||||||||||  ||||   || |||||||||||||    
T  31637839 acttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaacctcatcttcaaagtagtcagtatgaaaatcgtacttttgtccaa 31637740  T
Q  339 cttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaagt 416  Q
    ||||||||||||||| ||||| || ||| ||||||||||||| || ||||||| | || || |||| |||||||||||    
T  31637739 cttcataatggagaatattaacgtcttcgccatgctctgcatgttttgaaacaaactt-aaataatagttgtttaagt 31637663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 447 - 591
Target Start/End: Complemental strand, 31656631 - 31656485
Alignment:
Q  447 actttgttgatatatcgttggatcataaaacatttgccggagcatcaaacattaattttatgaacaatgggaaaaacaaaagggagaaagaacaca--ac 544  Q
    |||| ||||||| || |||| |||| ||| || | || |||||||||| | ||| |||  ||||||| || |||||||||||| |||||||||     ||    
T  31656631 acttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaaacaaaaggcagaaagaacgtgttac 31656532  T
Q  545 acacctacaggtataaaagtaaaatcagcaattcttctctcaatatt 591  Q
     |||||||||||||||||||||||||||| |||||| ||||||||||    
T  31656531 gcacctacaggtataaaagtaaaatcagcgattcttttctcaatatt 31656485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 592
Target Start/End: Complemental strand, 31630248 - 31630139
Alignment:
Q  485 ggagcatcaaacattaattttatgaacaatgggaaaaacaaaagggagaaagaacaca--acacacctacaggtataaaagtaaaatcagcaattcttct 582  Q
    |||||||||| | ||| |||  ||||||| || |||||||||||| |||||||||     || |||||||||||||||||||||||||||| |||||| |    
T  31630248 ggagcatcaagccttagtttcttgaacaaaggaaaaaacaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattctttt 31630149  T
Q  583 ctcaatattc 592  Q
    ||||||||||    
T  31630148 ctcaatattc 31630139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 31637459 - 31637411
Alignment:
Q  542 aacacacctacaggtataaaagtaaaatcagcaattcttctctcaatat 590  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  31637459 aacacacctacaggtataaaagtaaaatcagcaattcttttctcgatat 31637411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 546 - 592
Target Start/End: Complemental strand, 31646292 - 31646246
Alignment:
Q  546 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattc 592  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||    
T  31646292 cacctacaggtataaaagtaaaatcagcaattctttgctcaatattc 31646246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 237 - 387
Target Start/End: Original strand, 9105009 - 9105159
Alignment:
Q  237 tcacttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtcc 336  Q
    ||||||||||||||||||| |  |||||||| ||||||||| |||   | ||  ||||   ||| | |||||||||||| ||||| ||||||||||||||    
T  9105009 tcacttacaggtacatcagtaccgttgctatgcgctgacccccattctttgtgttaaattcatcaagaaagtagtcatagtgaggctcatacttttgtcc 9105108  T
Q  337 aacttcataatggagaacattaaagt-tttcaccatgctctgcatattgtga 387  Q
    |||||||||||| ||||| || ||||  |||||| |||||||||||||||||    
T  9105109 aacttcataatgtagaac-ttgaagtccttcaccgtgctctgcatattgtga 9105159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 9104799 - 9104929
Alignment:
Q  28 tctttggcttaattgatagtcctccttttccacaatcggaaagctcattccaccaaggcacagagctaaaatttcccttggcatttggaaacaccgtctc 127  Q
    |||||||||||||||| ||||||  ||| |||||||| |||||||||||  |||| ||||||   || ||||| ||||| |||   || ||||| |||||    
T  9104799 tctttggcttaattgaaagtccttttttcccacaatcagaaagctcattataccacggcacattactgaaattccccttagcagcagggaacactgtctc 9104898  T
Q  128 acccccttcttcgacatctgaactgtatcat 158  Q
    |||||||||||| ||||||| ||||||||||    
T  9104899 acccccttcttcaacatctgtactgtatcat 9104929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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