View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_low_11 (Length: 359)
Name: NF16041_low_11
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 43179420 - 43179086
Alignment:
| Q |
16 |
aagtagatggttaatgaatacatcaaggtatcacaacactttaaccatccgctatagacaattaatcatgacttttaacatcattaaccatgatcgggtg |
115 |
Q |
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| T |
43179420 |
aagtagatggttaatggatacatcaaggtatcacaacactttaaccatccgctatagacaattaatcatgacttttaacatcattaaccatgatcgggtg |
43179321 |
T |
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| Q |
116 |
ttcaagtacatatgaattcattcaccacaatttgtgtttaaatatacacctaaaatatggtgattagttttcttaaaaaatatggttaattgagttgagt |
215 |
Q |
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| T |
43179320 |
ttcaagtacatatgaattcattcaccacaatttgtgtttaaatatacacctaaaatatggtgattagttttcttaaaaaatatggttaattgagttgagt |
43179221 |
T |
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| Q |
216 |
gagtgattaacgaattgctgctccatgttaaattcattaacaaccaactaaacccaatcaatcacatatttaaaccacgttacctatctagatcattgtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43179220 |
gagtgattaacgaattgctgctccatgttaaattcattaacaaccaactaaacccaatcaatcacatatttaaaccacgttacctatctagatcattgtc |
43179121 |
T |
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| Q |
316 |
taattttgatgttaaaattgtgtgtaaagtataat |
350 |
Q |
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| T |
43179120 |
taattttgatgttaaaattgtgtgtaaaatataat |
43179086 |
T |
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