View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_low_14 (Length: 292)
Name: NF16041_low_14
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 44969310 - 44969591
Alignment:
| Q |
1 |
tatgtactccaagttctttctcaataaaagaac-taattattggttgagatatacttttctgccaacttggctagctcaagagttttaaatccatatggt |
99 |
Q |
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| T |
44969310 |
tatgtactccaagttctttctcaataaaagaacctaattattggttgagatatacttttctgccaacttggctagctcaagagttttaaatccatatgat |
44969409 |
T |
|
| Q |
100 |
gaccaccaatcaatagaactcgtggttacaacctctagttgatttgaagacattgcatatattccattctttgtgtgaaacgaaacatgtcaaactgata |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
44969410 |
gaccaccaatcaatagaactcgtggttacaacctccggttgatttgaagacattgcatatattccattctttgtgt-----gaaacatgttaaactgata |
44969504 |
T |
|
| Q |
200 |
actttaaagtttttgttcctcttcattttaatatannnnnnncaaatgcttgcatagtgtagtgtcctc-tcattagatgatgtcca |
285 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
44969505 |
actttaaagtttttgttcctcctcattttaatatatttttttcaaatgcttgcatagtgtagtgtcctcttcattatatgatgtcca |
44969591 |
T |
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