View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_low_6 (Length: 404)
Name: NF16041_low_6
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 40960446 - 40960820
Alignment:
| Q |
17 |
ggtttatgattgaaattgtaacatatttgtgatttgttatgcatcttacatcaccaattgattatctcatcaaatgctgagatgcttatttatcttacat |
116 |
Q |
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| T |
40960446 |
ggtttatgattgaaattgtaacatatttgtgatttgttatgcatgttacgtcaccagttgattatctcatcaaatgctgagatgcttatttatcttacat |
40960545 |
T |
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| Q |
117 |
actttagcagagtcaaaattttcatattacattgaaaacgttacctttctatgttggatacttgtgctggaatcgaagttttaactaggaatttaaagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960546 |
actttagcagagtcaaaattttcatattacattgaaaatgttacctttctatgttggatacttgtgctggaatcgaagttttaactaggaatttaaagtt |
40960645 |
T |
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| Q |
217 |
ttcatttcgtttttaatttttcagatatttgcatctgatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggtata |
316 |
Q |
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| T |
40960646 |
ttcatttcatttttaatttttcagatatttgcatctgatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggtata |
40960745 |
T |
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| Q |
317 |
ttttaagttgaatatccatagttatttccttaccatgcaatttagatgttccatatcaatgataaaattccagaa |
391 |
Q |
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| T |
40960746 |
ttttaagttgaatatccatagttatttccttaccatgcaatttagatgttccatatcaatggtaaaattccagaa |
40960820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 22795538 - 22795618
Alignment:
| Q |
233 |
tttttcagatatttgcatctgatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggt |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
22795538 |
tttttcagatctttgcatctgatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggt |
22795618 |
T |
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