View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_low_7 (Length: 393)
Name: NF16041_low_7
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 45448852 - 45449226
Alignment:
| Q |
1 |
atgtttgtgttagcttttgccgcatttaacttagcctaaccgttcaatgatcatcttagtccgagctattttttatttcaacctactacttattcagtgt |
100 |
Q |
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| T |
45448852 |
atgtttgtgttagcttttgccgcatttaacttagcctaaccgttcgatgattatcttagtccgagctattttttatttcaacctactacttattcattgt |
45448951 |
T |
|
| Q |
101 |
ttagcatttctaattgctctttcctgttttgacttgaagttataaaggctacttcttttttagaataagatgaaaaaataacctgtctattgtgacttgt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45448952 |
ttagcatttccaattgctctttcctgttttgacttgaagttattaaggctacttcttttttagaataagatgaaaaaataacctgtctattgtgacttgt |
45449051 |
T |
|
| Q |
201 |
aagctataaccttaatacaccttattgccaagnnnnnnnaggaaaatattaaggttggttgagaattattgttcaagtattatttcatgaacattatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45449052 |
aagctataaccttaatacaccttattgccaagtttttttaggaaaatattaaggttggttgagaattattgttcaagtattatttcatgaacattatgaa |
45449151 |
T |
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| Q |
301 |
tcatgcttcaaaaatcatctcaccaaaacatactttacataggactagcagtaggttgtcggttatgtgccttat |
375 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45449152 |
tcatgcttcaaaaatcatctccccaaaacatactttacataggactagcagtaggttgtcagttatgtgccttat |
45449226 |
T |
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