View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16041_low_8 (Length: 387)
Name: NF16041_low_8
Description: NF16041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16041_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 13887563 - 13887925
Alignment:
| Q |
15 |
atcagttataccaatgagtgagtgacaatacacaacaaaggatatttgaagatataaaccagagatttagaggctctttttgggtttctttaatcctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887563 |
atcagttataccaatgagtgagtgacaatacacaacaaaggatatttgaagatataaaccagagatttagaggctctttttgggtttctttaatcctgag |
13887662 |
T |
|
| Q |
115 |
aaatcaatttgttttaaccgggacattcgtctttactgttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaacccta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13887663 |
aaatcaatttgttttaaccgggacattcgtctttactgttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaacccta |
13887762 |
T |
|
| Q |
215 |
acaaacttgaatatgccaactgtatttctgttatga-cagttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagc |
313 |
Q |
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| T |
13887763 |
acaaacttcaacatgccagctgtatttctgttatgaccagttagaggagttgtgttactatttagttagtgtatgatggatataatgtactctcattagc |
13887862 |
T |
|
| Q |
314 |
ttataaataggtgcttgtacattgtaacagattcattcattcgataatacatttttctccttt |
376 |
Q |
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| T |
13887863 |
ttataaataggtgcttgtacattgtaacagattcattcattcgataatacatttttccccttt |
13887925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 154 - 376
Target Start/End: Original strand, 13892359 - 13892581
Alignment:
| Q |
154 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacag |
253 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13892359 |
tgttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaatatgccaactgtatttctgttatgacag |
13892458 |
T |
|
| Q |
254 |
ttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcat |
353 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13892459 |
ttagatgagttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgcacattgtaacagattcattcat |
13892558 |
T |
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| Q |
354 |
tcgataatacatttttctccttt |
376 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
13892559 |
tcaataatacatttttctccttt |
13892581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 154 - 364
Target Start/End: Original strand, 27816210 - 27816420
Alignment:
| Q |
154 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaat-atgccaactgtatttctgttatgaca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| || |||||| |||| |||||||| ||||| |
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| T |
27816210 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
27816308 |
T |
|
| Q |
253 |
gttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattca |
352 |
Q |
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|||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
27816309 |
gttagaggagttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatagatgcttacacattgtaactaattcattca |
27816408 |
T |
|
| Q |
353 |
ttcgataataca |
364 |
Q |
| |
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|| |||||||| |
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|
| T |
27816409 |
atcaataataca |
27816420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 12147438 - 12147358
Alignment:
| Q |
280 |
tagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattcattcgataa |
360 |
Q |
| |
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|||| |||||||| || ||||||| |||| ||||||||||||| || | || |||||||||| | |||||||||| |||| |
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|
| T |
12147438 |
tagtatatgatagctacaatgtacactcaatagcttataaataagtacatgctcattgtaacaaactcattcattcaataa |
12147358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 153 - 351
Target Start/End: Original strand, 15094696 - 15094893
Alignment:
| Q |
153 |
ttgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgaca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| | ||||||||||||| ||||||| ||||| |
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| T |
15094696 |
ttgttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccaactgtaattctgtt-tgaca |
15094794 |
T |
|
| Q |
253 |
gttagatgagttgtgttactatgcagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgtacattgtaacagattcattc |
351 |
Q |
| |
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|||||| | | ||| |||| || |||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||| |
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| T |
15094795 |
gttagagtaatagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcattc |
15094893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 301
Target Start/End: Original strand, 18291734 - 18291879
Alignment:
| Q |
154 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagaaaaccctaacaaacttgaatatgccaactgtatttctgttatgacag |
253 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||| | || |||| ||||||||||||| |||||| |
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| T |
18291734 |
tgttacaaaataaaga---agatgaagttacttgtgatgcaagtaacttgagcaaaccctaacaaactgtactaggccagctgtatttctgttgtgacag |
18291830 |
T |
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| Q |
254 |
ttagatgag-ttgtgttactatgcagttagtgtatgatagatataatgt |
301 |
Q |
| |
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||||| || | |||||||| || |||||| ||||||||||||||||| |
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| T |
18291831 |
ttagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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