View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16042_high_3 (Length: 532)

Name: NF16042_high_3
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16042_high_3
NF16042_high_3
[»] chr7 (3 HSPs)
chr7 (342-521)||(25684729-25684909)
chr7 (18-243)||(25684409-25684630)
chr7 (422-475)||(22733353-22733406)
[»] chr1 (2 HSPs)
chr1 (73-243)||(40778188-40778354)
chr1 (342-403)||(40779879-40779940)
[»] chr3 (2 HSPs)
chr3 (349-472)||(34665243-34665365)
chr3 (429-470)||(52802135-52802176)
[»] chr2 (1 HSPs)
chr2 (428-475)||(11253642-11253689)
[»] chr5 (1 HSPs)
chr5 (425-474)||(31260194-31260243)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 342 - 521
Target Start/End: Original strand, 25684729 - 25684909
Alignment:
Q  342 cgaatacgggtgcggggcgggggtgagtatcccccgaccctggactcggccccgctttaaaactccaggttttccctgcacctgcacccggacccagtaa 441  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  25684729 cgaatacgggtgcggggcgggggtgagtatcccccgaccctgaattcggccccgctttaaaactccaagttttccctgcacctacacccgaacccagtaa 25684828  T
Q  442 attctgcttttcctcgttaaaatcggggc-gggggacccgacgggtgtctaccaataaacccctctgatttcgattttcat 521  Q
    |||||||||||||  |||||||| ||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  25684829 attctgcttttccctgttaaaattggggcggggggacccagcgggtgtctacccataaacccctctgatttcgattttcat 25684909  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 25684409 - 25684630
Alignment:
Q  18 attacaactctcattagctaacatcatcatcttctcatcttaataataagctaagaatatcatgtgaccttattatgactctcctaattagtaactatat 117  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25684409 attacaactctcattagctaacatc---atcttctcatcttaataataagctaacaatatcatgtgaccttattatgactctcctaattagtaactatat 25684505  T
Q  118 tatatttacatcataagttggttctatatactacnnnnnnnnnnnaaaattgcgtannnnnnnaccatggacttaccacaagcagtagaaaatatagacg 217  Q
     |||||||||||||||||||||||||||||||||            ||||||||||       ||||||||||||| ||||||  |||||||||||||||    
T  25684506 catatttacatcataagttggttctatatactacttttttttttt-aaattgcgtattttcttaccatggacttacgacaagctatagaaaatatagacg 25684604  T
Q  218 gtcaaagtatacgaaatattcatttg 243  Q
     |||||||||||||||||||||||||    
T  25684605 atcaaagtatacgaaatattcatttg 25684630  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 22733406 - 22733353
Alignment:
Q  422 cctgcacccggacccagtaaattctgcttttcctcgttaaaatcggggcggggg 475  Q
    ||||||||||  | |||||||||| |||||| | ||||||||||||||||||||    
T  22733406 cctgcacccgcgctcagtaaattcggctttttcccgttaaaatcggggcggggg 22733353  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 40778188 - 40778354
Alignment:
Q  73 aatatcatgtgaccttattatgactctcctaattagtaactatattatatttacatcataagttggttctatatactacnnnnnnnnnnnaaaattgcgt 172  Q
    |||||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||| ||||||||||            |||||||||    
T  40778188 aatatcatgtgaccttattatgactctcctaattagcaac--tatcatatttacatcataagttggttttatatactactttttttttt--aaattgcgt 40778283  T
Q  173 annnnnnnaccatggacttaccacaagcagtagaaaatatagacggtcaaagtatacgaaatattcatttg 243  Q
    |       ||||||||||||||||| || |||||||| ||||| | |||||||||||||||||||||||||    
T  40778284 attttcttaccatggacttaccacaggctgtagaaaacatagatgatcaaagtatacgaaatattcatttg 40778354  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 40779879 - 40779940
Alignment:
Q  342 cgaatacgggtgcggggcgggggtgagtatcccccgaccctggactcggccccgctttaaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||    
T  40779879 cgaatacgggtgcggggcgggggtgagtatcccccgaccccagatccggccccgctttaaaa 40779940  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 472
Target Start/End: Complemental strand, 34665365 - 34665243
Alignment:
Q  349 gggtgcggggcgggggtgagtatcccccgaccctggactcggccccgctttaaaactccaggttttccctgcacctgcacccggacccagtaaattctgc 448  Q
    |||||| ||||||  ||| |||||||||| ||| |  | || |||||| |||||||| ||||||||||| ||||||||| ||||| ||||||||||| ||    
T  34665365 gggtgcagggcggatgtgtgtatcccccggccccgaccccgaccccgcattaaaactacaggttttccc-gcacctgcatccggatccagtaaattcggc 34665267  T
Q  449 ttttcctcgttaaaatcggggcgg 472  Q
    |||| | |||||||||||||||||    
T  34665266 tttttcccgttaaaatcggggcgg 34665243  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 52802135 - 52802176
Alignment:
Q  429 ccggacccagtaaattctgcttttcctcgttaaaatcggggc 470  Q
    ||||||||||||||||| | |||||| |||||||||||||||    
T  52802135 ccggacccagtaaattcagtttttccccgttaaaatcggggc 52802176  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 475
Target Start/End: Original strand, 11253642 - 11253689
Alignment:
Q  428 cccggacccagtaaattctgcttttcctcgttaaaatcggggcggggg 475  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  11253642 cccggacccagttaattcggcttttccccgttaaaatcggggcggggg 11253689  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 31260243 - 31260194
Alignment:
Q  425 gcacccggacccagtaaattctgcttttcctcgttaaaatcggggcgggg 474  Q
    |||||||||||| || ||||| | ||||||||||||||||||||||||||    
T  31260243 gcacccggaccctgttaattcggtttttcctcgttaaaatcggggcgggg 31260194  T

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