View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16042_high_4 (Length: 467)
Name: NF16042_high_4
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 31649514 - 31649938
Alignment:
| Q |
1 |
ttattgaaatttacaatgaacaatggattcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgca |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31649514 |
ttattgaaatttgcaatgaacattggattcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgca |
31649613 |
T |
|
| Q |
101 |
agagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacnnnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31649614 |
agagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacataaaaaaa |
31649713 |
T |
|
| Q |
201 |
ncaagaaaaacggacaaaactaagtctcatttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctc |
300 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31649714 |
acgagaaaaacggacaaaactaggtctcgtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctc |
31649813 |
T |
|
| Q |
301 |
aatctcttggacaacttttcttagcaagcacgccacacgctaagatgaaaagaaaattgtgttagataatatacaaaaacaaaacatgtagtttcatgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31649814 |
aatctcttggacaacttttcttagcaagcacgccacacgctaagatgaaaagaaaattttgttagataatatacaaaaacaaaacatgtactttcatgaa |
31649913 |
T |
|
| Q |
401 |
tgcatttatgatttatatacaaaag |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31649914 |
tgcatttatgatttatatacaaaag |
31649938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 31649943 - 31649975
Alignment:
| Q |
419 |
acaaaagcaaatcaagagtatttatcatacagg |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31649943 |
acaaaagcaaatcaagagtatttatcatacagg |
31649975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 43878891 - 43878792
Alignment:
| Q |
71 |
accttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaa |
170 |
Q |
| |
|
|||| ||||||||| | ||||| |||||||| ||||| |||||| ||||||| || | |||||||||||| || | ||| |||||||| ||||||||| |
|
|
| T |
43878891 |
acctcactctcttctctagttccagatgcaagtgcctcgagtactcttattctcgactgatatttttcttcccgggccttaaaaagattactttgctgaa |
43878792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University