View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16042_high_5 (Length: 416)
Name: NF16042_high_5
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 2 - 406
Target Start/End: Original strand, 48877905 - 48878309
Alignment:
| Q |
2 |
ggctacaacatttcacatattttggacattgcgattgttgaagaaatgtggatgctctatgatagatgagcgtgaccgtctccattctcccaaagcttca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877905 |
ggctacaacatttcacatattttggacattgcgattgttgaagaaatgtggatgctctatgatagatgagcgtgaccgtctccattctcccaaagcttca |
48878004 |
T |
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| Q |
102 |
aattccgatatgggctatgaagtaaacgctagccgatatgggctctgataagaaacatacacaccccattgagatgctgaatattttcttccactttcat |
201 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48878005 |
aattccgatatgggctctgaagtaaacgctagccgatatgggctctgataagaaacatacacatcccattgagatgctgaatattttcttccactttcat |
48878104 |
T |
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| Q |
202 |
aagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacatgcatatgaaattgcttattagtacttcctagttcttattttacatcatat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878105 |
aagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacaagcataagaaattgcttattagtacttcctagttcttattttacatcatat |
48878204 |
T |
|
| Q |
302 |
taaaattggtcttctttctcatgtttgcaggatgaagcctccctcttccttagcatgatatatttctatgaagtattagtaatagtaggtatcacttgct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878205 |
taaaattggtcttctttctcatgtttgcaggatgaagcctccctcttccttagcatgatatatttctatgaagtattagtaatagtaggtatcacttgct |
48878304 |
T |
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| Q |
402 |
ttcat |
406 |
Q |
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||||| |
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| T |
48878305 |
ttcat |
48878309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 48873122 - 48873199
Alignment:
| Q |
282 |
gttcttattttacatcata-ttaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttccttagcatg |
358 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||| || |||||| |
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| T |
48873122 |
gttcttattttacatcatacttaaaattcttcttctttctcatgtttgcataacaaagcctccctctttctcagcatg |
48873199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 48923228 - 48923166
Alignment:
| Q |
303 |
aaaattggtcttctttctcatgtttgcaggatgaagcctccctcttccttagcatgatatatt |
365 |
Q |
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||||||| ||||| ||||||||||||||| | ||||||||||||| | |||| |||||||||| |
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| T |
48923228 |
aaaattgttcttccttctcatgtttgcagaacgaagcctccctctacattagtatgatatatt |
48923166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 168 - 353
Target Start/End: Original strand, 9578458 - 9578641
Alignment:
| Q |
168 |
cattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacatgcatatgaaattgctt |
267 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | || | | || |||||| |
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| T |
9578458 |
cattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagataaac--gttttagacattgcta |
9578555 |
T |
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| Q |
268 |
attagtacttcctagttcttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctta |
353 |
Q |
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| | ||||||| ||||| |||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
9578556 |
agtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgcaaaatgaagcctccgtcttcctta |
9578641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 352
Target Start/End: Original strand, 9582960 - 9583142
Alignment:
| Q |
168 |
cattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacatgcatatgaaattgctt |
267 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | || | | || |||||| |
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| T |
9582960 |
cattgaaatgctgaatattttcttccactttcataagcttcgaatcagcttatattccatatctcaaagcaagaagataaac--gttttagacattgcta |
9583057 |
T |
|
| Q |
268 |
attagtacttcctagttcttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctt |
352 |
Q |
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| | ||||||| ||||| |||||||||||| |||||| ||||||||| |||||||||||| | ||||||||| |||||||||| |
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| T |
9583058 |
agtgttacttccaagttcctattttacatcacattaaatttggtcttccttctcatgtttgtaaaatgaagccttcctcttcctt |
9583142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 9573880 - 9574074
Alignment:
| Q |
163 |
caccccattgagatgctgaatattttcttccactttcataagctttgaatcagcttatattcaatatctcaaagcaagaagaaacacatgcatatgaaat |
262 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| | | || || |
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| T |
9573880 |
caccccattgaaatgctgaatattttcttccactttcataagctttgaatcagcttatattccatacctcaaagcaagaagatacac--gttttagacat |
9573977 |
T |
|
| Q |
263 |
tgcttattagtacttcctagtt------cttattttacatcatattaaaattggtcttctttctcatgtttgcaggatgaagcctccctcttcctta |
353 |
Q |
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|||| || ||||||| |||| |||| |||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
9573978 |
tgctaatcgttacttccaagttgctatgtttatgttacatcacattaaatttggtcttccttctcatgtttgcaaactgaagcctccctcttcctta |
9574074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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