View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16042_high_9 (Length: 350)
Name: NF16042_high_9
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 133 - 343
Target Start/End: Original strand, 600075 - 600286
Alignment:
| Q |
133 |
atatatgtacgatctatgtaattaaagagctgattaaaatcattatctttaaactccttataatt-acttacggttctcccctcctaattgaatggtttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
600075 |
atatatgtacgatctatgtaattaaagagctgattaaaatcattatctttaaactccttataatttacttacggttctcccctcccaattgaatggtttt |
600174 |
T |
|
| Q |
232 |
ccatacacatgaacatatattgaacttatgatcacttgtttcaggacccaaatctcttacgaattggatcaattaattgttggtgtttggttttgttata |
331 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
600175 |
ccatacacacgaacatatattgaacttatgatcacttgtttcaggacccaaatctcttacgaattggatcaattaattgttggtgtttggttttgttata |
600274 |
T |
|
| Q |
332 |
tatattcttgga |
343 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
600275 |
tatatttttgga |
600286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 599817 - 599890
Alignment:
| Q |
68 |
ttaaagagctgaaaattagagagacagtaacaagcaattaaagtttccataaccctagtttagatatatatgta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
599817 |
ttaaagagctgaaaattagagagacagtaacaagcaattaaagtttccataaccctagtttagatatatatgta |
599890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 599755 - 599800
Alignment:
| Q |
1 |
tcccttagccacttccatattgtttacatcacaaaggaagtaattaggg |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
599755 |
tcccttagccacttccat---gtttacatcacaaaggaagtaattaggg |
599800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University