View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16042_low_12 (Length: 301)
Name: NF16042_low_12
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 14569953 - 14570228
Alignment:
| Q |
13 |
attatacttatttactttatttttcatatatattgcagactttaccttcaaattttgcaaattatttgtgctacaatgtgtgcgataacattatattttg |
112 |
Q |
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| T |
14569953 |
attatacttatttactttatttttcatatatattgcagactttaccttcaaattttgcaaattatttgtgctacaatgtgtgcgataacattatattttg |
14570052 |
T |
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| Q |
113 |
tggagattatggagaaaaacaacatcaacaacacaacacaaattggtccgaagtggaaccaatttattgttcagcagaatttttatattggagactatat |
212 |
Q |
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| T |
14570053 |
tggagattatgaagaaaaacaacatcaacaacacaacacaaattggtccgaagtggaaccaatttattgttcagcagaatttttatattggagactatat |
14570152 |
T |
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| Q |
213 |
aagatttaaatttgttaccaataattattatgtttgtcacgtttttcatttatgattgtagcgttttagtttatat |
288 |
Q |
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| T |
14570153 |
aagatttaaatttgttaccaataattattatgtttgtcacgtttttcatttatgattgtaccgttttagtttatat |
14570228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 125 - 288
Target Start/End: Original strand, 19782054 - 19782217
Alignment:
| Q |
125 |
agaaaaacaacatcaacaacacaacacaaattggtccgaagtggaaccaatttattgttcagcagaatttttatattggagactatataagatttaaatt |
224 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19782054 |
agaagaacaacatcaacaacacaacacaaattggtccgaactggaaccaatttattgttcagcagaatttttatattggagactatataagatttaaatt |
19782153 |
T |
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| Q |
225 |
tgttaccaataattattatgtttgtcacgtttttcatttatgattgtagcgttttagtttatat |
288 |
Q |
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| T |
19782154 |
tgttaccaataattattatgtttgtcatgtttttcatttatgattttaccgttttagtttatat |
19782217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 19781919 - 19782033
Alignment:
| Q |
13 |
attatacttatttactttatttttcatatatattgcagactttaccttcaaattttgcaaattatttgtgctacaatgtgtgcgataacattatattttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
19781919 |
attatacttatttactttatttttcatatatattgcagactttaccttcagattttgcaaattatttgtgctacaatgtgtacgacaacattatattttg |
19782018 |
T |
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| Q |
113 |
tggagattatggaga |
127 |
Q |
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| T |
19782019 |
tggagattatggaga |
19782033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 54599118 - 54599021
Alignment:
| Q |
172 |
caatttattgttcagcagaatttttatattggagactatataagatttaaatttgttaccaataattattatgtttgtcacgtttttcatttatgatt |
269 |
Q |
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|||||| || |||||||| |||||||||| || | |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |
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| T |
54599118 |
caatttgttcttcagcaggatttttatatagggggttatataagatttaaatttattttgaataattattatgtatgtcacgtttttcaattatgatt |
54599021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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