View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16042_low_14 (Length: 250)

Name: NF16042_low_14
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16042_low_14
NF16042_low_14
[»] chr7 (4 HSPs)
chr7 (17-240)||(47932194-47932417)
chr7 (20-111)||(25418664-25418755)
chr7 (20-111)||(47232918-47233009)
chr7 (173-218)||(47232541-47232586)
[»] chr3 (5 HSPs)
chr3 (17-240)||(54944996-54945219)
chr3 (17-240)||(5883637-5883859)
chr3 (20-111)||(48267199-48267290)
chr3 (20-111)||(52350688-52350779)
chr3 (20-111)||(35871297-35871388)
[»] scaffold0182 (1 HSPs)
scaffold0182 (17-240)||(8093-8317)
[»] chr4 (11 HSPs)
chr4 (17-240)||(43944245-43944463)
chr4 (20-111)||(21631903-21631994)
chr4 (20-111)||(2504089-2504180)
chr4 (20-111)||(53829638-53829729)
chr4 (20-111)||(34736913-34737004)
chr4 (20-111)||(46093260-46093350)
chr4 (21-111)||(20037214-20037304)
chr4 (20-82)||(2499868-2499930)
chr4 (42-111)||(21803827-21803896)
chr4 (173-218)||(21631523-21631568)
chr4 (173-218)||(21804231-21804276)
[»] chr8 (6 HSPs)
chr8 (20-111)||(918083-918174)
chr8 (20-111)||(10187268-10187359)
chr8 (20-111)||(28843877-28843968)
chr8 (20-111)||(4139198-4139289)
chr8 (173-218)||(4139624-4139669)
chr8 (173-218)||(10187708-10187753)
[»] chr6 (5 HSPs)
chr6 (20-111)||(13432542-13432633)
chr6 (173-240)||(26720425-26720492)
chr6 (18-111)||(18883514-18883607)
chr6 (136-243)||(18883908-18884012)
chr6 (26-75)||(26720500-26720549)
[»] chr5 (3 HSPs)
chr5 (20-111)||(37301008-37301099)
chr5 (20-111)||(21604223-21604314)
chr5 (20-111)||(36992003-36992093)
[»] chr2 (6 HSPs)
chr2 (20-111)||(7573180-7573271)
chr2 (20-111)||(16667775-16667866)
chr2 (20-111)||(43565073-43565164)
chr2 (20-111)||(29456281-29456372)
chr2 (27-111)||(41645796-41645880)
chr2 (173-218)||(43565497-43565542)
[»] chr1 (4 HSPs)
chr1 (20-111)||(13787191-13787282)
chr1 (20-111)||(22911744-22911835)
chr1 (20-111)||(25806860-25806951)
chr1 (18-111)||(39624403-39624496)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 47932417 - 47932194
Alignment:
Q  17 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47932417 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 47932318  T
Q  117 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatgcatatgtgccacctctaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47932317 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatacatatgtgccacctctaaa 47932218  T
Q  217 aatatattcttaaatatagtataa 240  Q
    ||||||||||||||||||||||||    
T  47932217 aatatattcttaaatatagtataa 47932194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 25418755 - 25418664
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  25418755 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 25418664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 47233009 - 47232918
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| |||||||||   |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  47233009 acatggaaatttaacctttgatcatggaatttggtgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 47232918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 47232586 - 47232541
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||||    
T  47232586 tcattattcttaagctatgattatgcatatgtgtcacctctaaaaa 47232541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 54945219 - 54944996
Alignment:
Q  17 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54945219 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 54945120  T
Q  117 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatgcatatgtgccacctctaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  54945119 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatacatatgtgccatctctaaa 54945020  T
Q  217 aatatattcttaaatatagtataa 240  Q
    ||||||||||||||||||||||||    
T  54945019 aatatattcttaaatatagtataa 54944996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 5883859 - 5883637
Alignment:
Q  17 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 116  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  5883859 gcaacaaggaaatttaacccttgactatggaattgattgacattcatactttccatcaattgagtttcttaaaattaaaagtaaatttgggtacaaaatt 5883760  T
Q  117 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatgcatatgtgccacctctaaa 216  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5883759 gtgatgatgttgatgtggcacctc-aagaccttcccataaactaaacttgagtcattcattattctgaagttataattatgcatatgtgccacctctaaa 5883661  T
Q  217 aatatattcttaaatatagtataa 240  Q
    ||||||||||| ||||||||||||    
T  5883660 aatatattcttcaatatagtataa 5883637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 48267199 - 48267290
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  48267199 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 48267290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 52350688 - 52350779
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  52350688 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 52350779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 35871297 - 35871388
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  35871297 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttggatgca 35871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 8317 - 8093
Alignment:
Q  17 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8317 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattgagagtaaatttgggtgcaaaatt 8218  T
Q  117 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatgcatatgtgccacctctaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  8217 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctgaagttataattatgcatatgtgtcacctctaaa 8118  T
Q  217 aatatattctt-aaatatagtataa 240  Q
    ||||||||||| |||||||||||||    
T  8117 aatatattcttaaaatatagtataa 8093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 43944245 - 43944463
Alignment:
Q  17 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgcaaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  43944245 gcaacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgaaatatt 43944344  T
Q  117 gtgatgatgttgatgtggcacctctaagaccttcccataaactaaacttgagtcattcattattctaaagttataattatgcatatgtgccacctctaaa 216  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| |||||    |||||||| | ||||| |||||||||||||||||||||||||||    
T  43944345 gtgatgatgctgatgtggtacctctaagacctt-ccataaactaaaattgag----tcattattatgaagttttaattatgcatatgtgccacctctaaa 43944439  T
Q  217 aatatattcttaaatatagtataa 240  Q
    ||||||||||||||||||||||||    
T  43944440 aatatattcttaaatatagtataa 43944463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 21631994 - 21631903
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  21631994 acatggaaatttaacccttgaccatggaattggctgaccttcatactttccatcaattgagtttcctacaactaagagtaaatttgggtgca 21631903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 2504180 - 2504089
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  2504180 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 2504089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 53829729 - 53829638
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| |||| ||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  53829729 acatggaaatttaacctttgatcatgaaattggttgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 53829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 34737004 - 34736913
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||  |||||||||||||||  |||| |||||||||||||||||||||||||  || ||||||||||||||||| |||||    
T  34737004 acatggaaatttaacttttgaccatggaattggctgaccttcatactttccatcaattgagttttctacaattaagagtaaatttgagtgca 34736913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 46093260 - 46093350
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  46093260 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaa-taagagtaaatttgggtgca 46093350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 20037214 - 20037304
Alignment:
Q  21 catggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||| ||||||||||||||||||| |||||  |||  || ||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  20037214 catgggaatttaacccttgaccatgaaattggctgatctttatactttccatcaattgagtttcctacaattaagagtaaatttggatgca 20037304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 2499930 - 2499868
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtt 82  Q
    ||||||||||||| ||||||||||||||||||   ||  |||||||||| |||||||||||||    
T  2499930 acatggaaatttagcccttgaccatggaattggccgatcttcatacttttcatcaattgagtt 2499868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 21803827 - 21803896
Alignment:
Q  42 catggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||  |||| || ||||||||||| ||||||||||| || || ||||||||||||||| ||||    
T  21803827 catggaattggctgaccttaatactttccattaattgagtttcctacaactaagagtaaatttggatgca 21803896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 21631568 - 21631523
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||||    
T  21631568 tcattattctcaagctatgattatgcatatgtgtcacctctaaaaa 21631523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 21804231 - 21804276
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||||    
T  21804231 tcattattctcaagctatgattatgcatatgtgtcacctctaaaaa 21804276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 918174 - 918083
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  918174 acatggaaatttaacccttgaccatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgcgtgca 918083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 10187268 - 10187359
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  10187268 acatggaaatttaacccttgaccatggaattggctgaccttcatactttccatcaattgagtttcctacaactaagagtaaatttgggtgca 10187359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 28843877 - 28843968
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  28843877 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttggatgca 28843968  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 4139198 - 4139289
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||  || || ||||||||||||||| ||||    
T  4139198 acatgaaaatttaacccttgaccatggaattggctgaccttcatactttccatcaattgagttttctacaactaagagtaaatttggatgca 4139289  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 4139624 - 4139669
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||||    
T  4139624 tcattattctcaagctatgattatgcatatgtgtcacctctaaaaa 4139669  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 10187708 - 10187753
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||| ||||| ||||||| |||||||||||||| ||||||||||||    
T  10187708 tcatcattctcaagttatgattatgcatatgtgtcacctctaaaaa 10187753  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 13432633 - 13432542
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  13432633 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 13432542  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 26720492 - 26720425
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaatatattcttaaatatagtataa 240  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720492 tcattattccgaagttatgattatgcatatgtgccacctctaaaaatatattcttaaatatagtataa 26720425  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 18883514 - 18883607
Alignment:
Q  18 caacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||  |||  ||||||| ||||| ||||||||||||||||| |||||||| || |||||| ||||||||||||||||    
T  18883514 caacatggaaatttaaccctatacctaggaattggttgaccttcatactttccatcaactgagtttcctacaattaaaagtaaatttgggtgca 18883607  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 18883908 - 18884012
Alignment:
Q  136 acctctaagaccttcccataaactaaacttgagtcattcattattctaaag-ttataattatgcatatgtgccacctctaaaaatatattcttaaatata 234  Q
    |||| ||||||||||||||||| |||| ||||    ||||||||||| ||| |||| |||||||||||| | |||||||||||| ||||||| | |||||    
T  18883908 acctttaagaccttcccataaattaaatttga----ttcattattcttaagcttatgattatgcatatgcgtcacctctaaaaaaatattctcacatata 18884003  T
Q  235 gtataattt 243  Q
    |||||||||    
T  18884004 gtataattt 18884012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 26720549 - 26720500
Alignment:
Q  26 aaatttaacccttgaccatggaattgattgacattcatactttccatcaa 75  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  26720549 aaatttaacccttgaccatgaaattgactgacattcatactttccatcaa 26720500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 37301099 - 37301008
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  37301099 acatggaaatttaacctttgaccatggaattggctgaccttcatactttccatcaattgagtttcctataattaagagtaaatttgagtgca 37301008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 21604314 - 21604223
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||| |||||||||| |||| ||||||||||  |||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||    
T  21604314 acatgaaaatttaacctttgatcatggaattggctgaccttcatgctttccatcaactgagtttcctacaattaagagtaaatttgggtgca 21604223  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 36992003 - 36992093
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| ||  | ||||||||||||||||||||    
T  36992003 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacca-taagagtaaatttgggtgca 36992093  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 7573271 - 7573180
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  7573271 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 7573180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 16667866 - 16667775
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  16667866 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttaggtgca 16667775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 43565073 - 43565164
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||| |||| || |||||||||||||||| ||||||    
T  43565073 acatggaaatttaacccttgaccatggaattggctgcccttcatactttccatcaattgaatttcctacaattaagagtaaatttaggtgca 43565164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 29456281 - 29456372
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||||||||||||||||||   || | ||||||||||||||||||||| |||| || |||||||||||||||| ||||||    
T  29456281 acatggaaatttaacccttgaccatggaattagctgcccttcatactttccatcaattgaatttcctacaattaagagtaaatttaggtgca 29456372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 41645880 - 41645796
Alignment:
Q  27 aatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||| |||| ||| ||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||| ||||    
T  41645880 aatttaacctttgatcatagaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttggatgca 41645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 43565497 - 43565542
Alignment:
Q  173 tcattattctaaagttataattatgcatatgtgccacctctaaaaa 218  Q
    |||||||||| ||||||| |||||||||||| | ||||||||||||    
T  43565497 tcattattcttaagttatgattatgcatatgcgtcacctctaaaaa 43565542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 13787191 - 13787282
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  13787191 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 13787282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22911835 - 22911744
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| || |||||||||||| ||||||||||    
T  22911835 acatgaaaatttaacccttgaccatggaattgactgaccttcatactttccatccattgagtttcctacaattaagagtaattttgggtgca 22911744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 25806951 - 25806860
Alignment:
Q  20 acatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  25806951 acatggaaatttaacctttgatcatggaattggctgaccttcatactttccatcaattgagtttcctacaattaagagtaaatttgggtgca 25806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 39624403 - 39624496
Alignment:
Q  18 caacatggaaatttaacccttgaccatggaattgattgacattcatactttccatcaattgagtttcttaaaattaagagtaaatttgggtgca 111  Q
    ||||||||||||||||||||  |||  ||||||| ||||| ||||||||||||||||| |||||||| || |||||| ||||||||||||||||    
T  39624403 caacatggaaatttaaccctatacctaggaattggttgaccttcatactttccatcaactgagtttcctacaattaaaagtaaatttgggtgca 39624496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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