View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16042_low_5 (Length: 419)
Name: NF16042_low_5
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 24212468 - 24212035
Alignment:
| Q |
1 |
taagcacaattcatgtgatagctgcaaagacaatattacaagattaggttcgaaatcgataatatttta-----tttgaacccactagactaaagatcaa |
95 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
24212468 |
taagcacaattcaggtgatagctgcaaagacaatattacaaggttaggtttgaaatcgagaatactttaaaacgtttgaacccactagactaaagatcaa |
24212369 |
T |
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| Q |
96 |
gagtctcaaataatcattaaataattgctaaatgaggtcatctgaaatcatttagcgatcatataattgttgattg----------------tcaaatga |
179 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
24212368 |
gagtctcaaatcatcattaaataattgctaaatgaggtcatctaaaatcatttagcgatcatataattgttgattgctacaaaaaatgattgtcaaatga |
24212269 |
T |
|
| Q |
180 |
gtttattattattaagtctcaaatcatttagcaatcatatgattgaaaaaacaaatgaggtcagctgtccacattgcaccaatgcaatgtaagaaagtaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24212268 |
gtttattattattaagtctcaaatcatttagcaatcatatgattgaaaaaacaaatgaggtcagctgtccacattgcaccaatgcaatgtaagaaagtaa |
24212169 |
T |
|
| Q |
280 |
gaggaccgaaaagtttgttgtgccattactatggttttatttttgtgaacaaatgaaaaacgtgacattcttattgtgttttgttttcttagacttttct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24212168 |
gaggaccgaaaagtttgttgtgccattactatggttttatttttgtgaacaaatgaaaaacgtgacattcttattgtgttttgttttcttagacttttct |
24212069 |
T |
|
| Q |
380 |
ttatacagtttttggattttgatgatgatgatgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24212068 |
ttatacagtttttggattttgatgatgatgatgt |
24212035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 283 - 392
Target Start/End: Complemental strand, 24208425 - 24208317
Alignment:
| Q |
283 |
gaccgaaaagtttgttgtgccattactatggttttatttttgtgaacaaatgaaaaacgtgacattcttattgtgttttgttttcttagacttttcttta |
382 |
Q |
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||||||||||||||||||| ||||| | || | ||||||||||||||||| | |||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
24208425 |
gaccgaaaagtttgttgtgacatta-tgtgctcttatttttgtgaacaaaaggaaaacgtgtcattattattgtgttttgtttttgtagacttttcttta |
24208327 |
T |
|
| Q |
383 |
tacagttttt |
392 |
Q |
| |
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| | |||||| |
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| T |
24208326 |
ttcggttttt |
24208317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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