View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16042_low_8 (Length: 371)
Name: NF16042_low_8
Description: NF16042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16042_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 62 - 353
Target Start/End: Original strand, 45405686 - 45405977
Alignment:
| Q |
62 |
ggagaaactcatttatgtcagacaaaatattcacacaccgaaccatattatacttaatcaagcgattgaattcaagtagctaatgagtttcagttaaaag |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45405686 |
ggagaaactcatttatgtcagacaaaatattcacacatccaaccatattatacttaatcaagcgattgaattcaagtagctaatgagtttcagttaaaag |
45405785 |
T |
|
| Q |
162 |
cagtttgttcgagagaattcaagttcaaattctaactaaaacaataataataagattttacttgcgtctcaatcaatcgaatcagagtttttgtgtatgt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45405786 |
cagtttgttcgagagaattcaagttcaaattctaactaaaacaataataataagattttacttgcgtctcaatcaatcgaatcagagtgtttgtgtatgt |
45405885 |
T |
|
| Q |
262 |
ataaaagtagtgattaattgattgagttattgaactaattgtcataaacttttgtgtaggaattataactatggaccagcagggaaggcctt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45405886 |
ataaaagtagtgattaattgattgagttattgtactaattgtcataaacttttgtgtaggaattataactatggaccagcagggaaggcctt |
45405977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 45405644 - 45405674
Alignment:
| Q |
17 |
attctctaactatatcagtttatttgtcaac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45405644 |
attctctaactatatcagtttatttgtcaac |
45405674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University