View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16043_high_1 (Length: 396)
Name: NF16043_high_1
Description: NF16043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16043_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 46379075 - 46379398
Alignment:
| Q |
17 |
cataggcatagaggcgttgtaacaaacaatgattcaaaaaactacaacattacaataccggcagtagaaggcacaacttcttcaatctcgtatatatctt |
116 |
Q |
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| T |
46379075 |
cataggcatagaggcgttgtaacaaacaatgattcaaaaaactacaacattacaataccggcagtagaaggcacaacttcttcaatctcgtatatatctt |
46379174 |
T |
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| Q |
117 |
tgtctcgcttactttaccttgaccgtttcttactctcacattctttaaaccttcatagaaaattaagggtagttttccgacgaa-taccaagtgggggag |
215 |
Q |
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| T |
46379175 |
tgtctcgcttactttaccttgaccgtttcttactctcacattcttca-----tca----aaatt-----tagttt--cgactaaataccaagtgggggag |
46379258 |
T |
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| Q |
216 |
attcttcatcaaaatttaggtacggtgagattcttccctatctgtaattatttaacctatgataactcacgaagctaggttatctactttctcctatata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46379259 |
attcttcatcaaaatttaggtacggtgagattcttccctatttgtaattatttaacctatgataactcacgaagctaggttatctactttctcctatata |
46379358 |
T |
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| Q |
316 |
caatgtagttgatttatgtgatcattctttttgtgttgag |
355 |
Q |
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| T |
46379359 |
caatgtagttgatttatgtgatcattctttttgtattgag |
46379398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 378
Target Start/End: Original strand, 46379425 - 46379455
Alignment:
| Q |
348 |
gtgttgagtaatatatagctcagtttatttg |
378 |
Q |
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| T |
46379425 |
gtgttgagtaatatatagctcagtttatttg |
46379455 |
T |
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