View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16043_low_4 (Length: 271)
Name: NF16043_low_4
Description: NF16043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16043_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 3878486 - 3878264
Alignment:
| Q |
19 |
accttagcaaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3878486 |
accttagcaaagacattgccttcatgaccagcaaatcaatagtaggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaac |
3878387 |
T |
|
| Q |
119 |
tgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3878386 |
tgtgattatacataaaactttaaataagcacatttataaaactaaaaacttttataaagaatacaacatatactcaagctcacattgttcttcagatatg |
3878287 |
T |
|
| Q |
219 |
ttccgattttcaaaattcaaatt |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3878286 |
ttccgattttcaaaattcaaatt |
3878264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 3864472 - 3864345
Alignment:
| Q |
26 |
caaagacattgccttcatgaccagcaaatcaatagttggtcctgatatgctcaatgatgtagcattcggataacgcctacacatgctcacaactgtgatt |
125 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
3864472 |
caaagagattgccttcatgaccagcaaataaatagaaggtcctgatatgctcaatgctgtagcattcggataacgcctacacatgtcctcaactgtaatt |
3864373 |
T |
|
| Q |
126 |
atacataaaactttaaataagcacattt |
153 |
Q |
| |
|
| |||| |||||| |||||| |||||| |
|
|
| T |
3864372 |
acacattgaactttgaataagtacattt |
3864345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 3864241 - 3864156
Alignment:
| Q |
154 |
ataaaactaaaaacttttataaagaatacaacatatactcaagctcgcattgttcttcagatatgttccgattttcaaaattcaaa |
239 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3864241 |
ataaaactaaaaacattcataaataaaacaacatatactcaagctcacattgttcttcagatatgtcccgattttcaaaattcaaa |
3864156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University