View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_high_3 (Length: 362)
Name: NF16045_high_3
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 35338631 - 35338966
Alignment:
| Q |
18 |
ggtggaacgaacaattattcccagaaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35338631 |
ggtggaacgaacaattattcccaggaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
35338730 |
T |
|
| Q |
118 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35338731 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
35338830 |
T |
|
| Q |
218 |
tcccaagtaatatttccagtaaatataattgttttccccttctctatcatgttgttttttccactaaaatctatcatataannnnnnnncttacaatatt |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
35338831 |
tcccaagtaatatttccagtaaatataattgttgtccccttctctatcatgttgttttttcctctaaaatctatcatataattttttttcttacaatatt |
35338930 |
T |
|
| Q |
318 |
ggcaatacctgcattctagattgctacaacttattg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35338931 |
ggcaatacctgcattctagattgctacaacttattg |
35338966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 28131645 - 28131310
Alignment:
| Q |
18 |
ggtggaacgaacaattattcccagaaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28131645 |
ggtggaacgaacaattattcccaggaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
28131546 |
T |
|
| Q |
118 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28131545 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
28131446 |
T |
|
| Q |
218 |
tcccaagtaatatttccagtaaatataattgttttccccttctctatcatgttgttttttccactaaaatctatcatataannnnnnnncttacaatatt |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
28131445 |
tcccaagtaatatttccagtaaatataattgttgtccccttctctatcatgttgttttttcctctaaaatctatcatataattttttttcttacaatatt |
28131346 |
T |
|
| Q |
318 |
ggcaatacctgcattctagattgctacaacttattg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
28131345 |
ggcaatacctgcattctagattgctacaacttattg |
28131310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 9309008 - 9308671
Alignment:
| Q |
18 |
ggtggaacgaacaattattcccagaaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9309008 |
ggtggaacgaacaattattcccaggaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaact |
9308909 |
T |
|
| Q |
118 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9308908 |
tatattcccaggtaatataagcaattatgtgtaaaagtactggcttgccccactacttacacacgattacaattaattatttccctatcgtcttgttttt |
9308809 |
T |
|
| Q |
218 |
tcccaagtaatatttcc-agtaaatataattgttttccccttctctatcatgttgttttttccactaaaatctatcatataannnnnnnncttacaatat |
316 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
9308808 |
tcccaagtaatatttccaagtaaatataattgttgtccccttctctatcatgttgttttttcctctaaaatctatcatataattttttttcttacaatat |
9308709 |
T |
|
| Q |
317 |
tggcaatacctgcattctagattgctacaacttattgc |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9308708 |
tggcaatacctgcattctagattgctacaacttattgc |
9308671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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