View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_high_4 (Length: 352)
Name: NF16045_high_4
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 6622225 - 6622558
Alignment:
| Q |
1 |
gtataaacaaatcgagagtaagaaaacttttgtattaaagaaccaactgttaaaaaaccttgctactccgtcgacccaaaataggattgtctcctcttgt |
100 |
Q |
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| T |
6622225 |
gtataaacaaatcgagagtaagaaaacttttgtattaaagaaccaactgttaaaaaaccttgctactccgtcgacccaaaataggattgtctcctcttgt |
6622324 |
T |
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| Q |
101 |
aggatatagttgtggatttcatccaaaacaaaagccaatgacattggtgcataaaatatgtatagtatatacaaaaactgcaaaagcaactgtatcagtt |
200 |
Q |
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| T |
6622325 |
aggatatagttgtggatttcatccaaaacaaaagccaatgacattggtgcataaaatatgtatagtatatacaaaaactgcaaaagcaactgtatcagtt |
6622424 |
T |
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| Q |
201 |
agccgaaactctatggtttcacctctccaagcttaaacttttactgatgctgggtgatattctctgttgcatatcatttgcctgtattttcaataagcta |
300 |
Q |
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| T |
6622425 |
agccgaaactctatggtttcacctctccaagcttaaactcttattgatgctgggtgatattctctgttgcatatcatttgcctgtattttcaataagcta |
6622524 |
T |
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| Q |
301 |
gagaccacctcttcaatgtttggtctgctatctg |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6622525 |
gagaccacctcttcaatgtttggtctgctatctg |
6622558 |
T |
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