View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16045_high_9 (Length: 244)

Name: NF16045_high_9
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16045_high_9
NF16045_high_9
[»] chr7 (1 HSPs)
chr7 (9-234)||(32061130-32061355)
[»] chr3 (4 HSPs)
chr3 (67-179)||(3236931-3237043)
chr3 (37-183)||(34933491-34933637)
chr3 (72-182)||(8969993-8970103)
chr3 (9-183)||(14505519-14505693)
[»] chr8 (1 HSPs)
chr8 (9-182)||(39530618-39530791)
[»] chr1 (1 HSPs)
chr1 (85-182)||(4166664-4166761)
[»] chr2 (1 HSPs)
chr2 (25-155)||(21086558-21086688)
[»] chr4 (1 HSPs)
chr4 (23-116)||(37589980-37590073)
[»] chr5 (1 HSPs)
chr5 (67-155)||(19233945-19234033)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 32061130 - 32061355
Alignment:
Q  9 ccaccaaaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32061130 ccaccaaaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactgat 32061229  T
Q  109 ttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatccaaatacttgctagtttccagcactg 208  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061230 ttaatcataatctcctttctcgctttagaaaaacacttactactccagatattgatcttttgccatactctatccaaatacttgctagtttccagcactg 32061329  T
Q  209 cccgcacacctaatatatcagttata 234  Q
    ||||||||||||||||||||||||||    
T  32061330 cccgcacacctaatatatcagttata 32061355  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 3237043 - 3236931
Alignment:
Q  67 aaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatct 166  Q
    ||||| |||||||||||||| |||||||||| ||| ||  | |||||||||| ||||||||  | | ||||||||||||| ||||||||| |||| ||      
T  3237043 aaaatgctcatcacatatgagggaattgactgaaggacagacttaatcataacctcccttccagatctagacaaacacttgctactccagctattaattc 3236944  T
Q  167 tttgccatactct 179  Q
    ||||||| |||||    
T  3236943 tttgccacactct 3236931  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 34933637 - 34933491
Alignment:
Q  37 atttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttag 136  Q
    ||||| ||||||||||| || |||||  | || |||||||| ||||| |||||||| |  | ||| ||  |||| ||||||| |||||| |  |||||||    
T  34933637 atttcctctagtaatgtgtttggtaacctaaagatactcatgacataagatggaatagcttgaagaacagatttgatcataacctccctcccggctttag 34933538  T
Q  137 acaaacacttactactccagatattgatcttttgccatactctatcc 183  Q
    ||||||| ||||| |||||| || ||||  ||||||| |||||||||    
T  34933537 acaaacatttactgctccagctactgattctttgccacactctatcc 34933491  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 8969993 - 8970103
Alignment:
Q  72 actcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgc 171  Q
    |||||| ||||| |||||||| || | ||| ||  |||| ||||| | ||||||||  |||||||||||||| ||||| |||||| || | ||||| |||    
T  8969993 actcataacataggatggaatagattgaagaacagatttgatcatgacctcccttcctgctttagacaaacatttactgctccagctactaatcttctgc 8970092  T
Q  172 catactctatc 182  Q
    || ||||||||    
T  8970093 cacactctatc 8970103  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 14505519 - 14505693
Alignment:
Q  9 ccaccaaaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaat 108  Q
    |||||||||  |||| ||||||| ||| |||||||| || |  ||||| ||||   |||| |||||||| ||||| |||||||| |  | ||| || |||    
T  14505519 ccaccaaaaagcattcatcatcttctctatttcatccaggagagtattgggtagcctgaagatactcataacataagatggaatagcttgaagaacaaat 14505618  T
Q  109 ttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatcc 183  Q
    || ||||||| ||| || |  ||||| |||||||| ||||| ||||| ||| | || ||||||||||| ||||||    
T  14505619 ttgatcataacctctctacctgctttggacaaacatttactgctccaaatacttattttttgccataccctatcc 14505693  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 39530791 - 39530618
Alignment:
Q  9 ccaccaaaagccatttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaat 108  Q
    |||||||||| |||| |||||||  |||||||| || ||||| ||||| |||||  |||| || ||||| ||||| || |  || |||| ||| ||| ||    
T  39530791 ccaccaaaaggcattcatcatcttttcgatttcctcaagtaaagtattcggtaacctgaagatgctcataacatacgacgagatagactgaagaactgat 39530692  T
Q  109 ttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatc 182  Q
    || |||||||  || | || ||||||||||| |||||||||||||||  |||| || || ||||| ||||||||    
T  39530691 ttgatcataacatctcgtcccgctttagacagacacttactactccaactatttattttctgccacactctatc 39530618  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 4166761 - 4166664
Alignment:
Q  85 gatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactccagatattgatcttttgccatactctatc 182  Q
    |||||||| || | ||| ||| |||| ||||| | ||||||||  ||||||||||| || || ||||||||| |||||||||| ||||||||||||||    
T  4166761 gatggaatagattgaagaactgatttgatcatgacctcccttcctgctttagacaagcatttgctactccagctattgatcttctgccatactctatc 4166664  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 21086558 - 21086688
Alignment:
Q  25 atcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctccc 124  Q
    ||||||| ||| ||||||||||  || || || |||||| |||| |||||||| ||||| |||||||| || | ||| ||  |||| ||||| |  ||||    
T  21086558 atcatcttctcaatttcatctaacaaagtgtttggtaatctgaagatactcataacataggatggaatagattgaagaaccgattttatcatgacttccc 21086657  T
Q  125 ttctcgctttagacaaacacttactactcca 155  Q
    |||  |||||||||||||| ||||| |||||    
T  21086658 ttcctgctttagacaaacatttactgctcca 21086688  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 37590073 - 37589980
Alignment:
Q  23 ttatcatctcctcgatttcatctagtaatgtattaggtaatttgaaaatactcatcacatatgatggaattgactaaagcactaatttaatcat 116  Q
    ||||||||| ||| || ||||||| ||| | ||| || |  ||||||||||||||||||||||| || ||||||  ||| || |||||||||||    
T  37590073 ttatcatcttctcaatctcatctaataaagaatttggcagcttgaaaatactcatcacatatgaggggattgacagaagaacaaatttaatcat 37589980  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 19234033 - 19233945
Alignment:
Q  67 aaaatactcatcacatatgatggaattgactaaagcactaatttaatcataatctcccttctcgctttagacaaacacttactactcca 155  Q
    ||||||||||| ||||| |||||||| ||||  || ||  |||||||||||| ||| |  |  |||||||| |||||||||||||||||    
T  19234033 aaaatactcataacatacgatggaatagactgtaggacggatttaatcataacctcacgccctgctttagataaacacttactactcca 19233945  T

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