View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16045_low_13 (Length: 249)
Name: NF16045_low_13
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 9162375 - 9162141
Alignment:
| Q |
13 |
attattctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttcta |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9162375 |
attattctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaaaaacggaggttcta |
9162276 |
T |
|
| Q |
113 |
tattgctacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9162275 |
tattgctacaacagctatcaacaagagaagacacttcgcaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatag |
9162176 |
T |
|
| Q |
213 |
cttaatcatcggcagaggaggttttggtacagttt |
247 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
9162175 |
cttaatcatcggcagaggaggttttggtacagttt |
9162141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 9219278 - 9219050
Alignment:
| Q |
19 |
ctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttctatattgc |
118 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | || || |||||||| |||| |
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| T |
9219278 |
ctatttgtggcggtttcatctctatacttgacgtaccaaaaaaggaaactcatcaaactaaagcaaaaattctttcaacaaaatggtggttctattttgc |
9219179 |
T |
|
| Q |
119 |
tacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaat |
218 |
Q |
| |
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||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
9219178 |
tacaacaactatcaacaagagaagacacttcgcaatcagctcaaatattcacggaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaat |
9219079 |
T |
|
| Q |
219 |
catcggcagaggaggttttggtacagttt |
247 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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| T |
9219078 |
catcggtagaggaggttttggtacagttt |
9219050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 9171201 - 9170965
Alignment:
| Q |
13 |
attattctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttcta |
112 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||||||||||||| | ||||| || |||||||||||||||||||| || || ||||| | |
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| T |
9171201 |
attattctatttgtggtgatttcttctctatacttgacataccaaaaaaggaaactcatcaagctcaagcaaaaattctttcaaaaaaatggtggttcca |
9171102 |
T |
|
| Q |
113 |
tattgctacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatag |
212 |
Q |
| |
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| ||||||||||| || || ||||| ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
9171101 |
ttttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaag |
9171002 |
T |
|
| Q |
213 |
cttaatcatcggcagaggaggttttggtacagtttac |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
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|
| T |
9171001 |
cttaatcattggcagaggaggttttggtacagtttac |
9170965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 9179183 - 9178947
Alignment:
| Q |
13 |
attattctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttcta |
112 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||||||||||||| | ||||| || |||||||||||||||||||| || || ||||| | |
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|
| T |
9179183 |
attattctatttgtggtgatttcttctctatacttgacataccaaaaaaggaaactcatcaagctcaagcaaaaattctttcaaaaaaatggtggttcca |
9179084 |
T |
|
| Q |
113 |
tattgctacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatag |
212 |
Q |
| |
|
| ||||||||||| || || ||||| ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
9179083 |
ttttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaag |
9178984 |
T |
|
| Q |
213 |
cttaatcatcggcagaggaggttttggtacagtttac |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9178983 |
cttaatcattggcagaggaggttttggtacagtttac |
9178947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 9156437 - 9156229
Alignment:
| Q |
39 |
tctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttctatattgctacaacagctatcaacaaga |
138 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| | || || ||||| || ||||||||||| ||||| |||||| |
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|
| T |
9156437 |
tctatacttgacattccaaaaaaggaaattcatcaaactaaagcaaaaattctttcaacaaaatggtggttccattttgctacaacaactatctacaaga |
9156338 |
T |
|
| Q |
139 |
gaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttg |
238 |
Q |
| |
|
||||| || || ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
9156337 |
gaagacacctcgcaatcagctgaaatattcactgaagaggaacttaagaaagccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttg |
9156238 |
T |
|
| Q |
239 |
gtacagttt |
247 |
Q |
| |
|
||||||||| |
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| T |
9156237 |
gtacagttt |
9156229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 9200764 - 9200532
Alignment:
| Q |
17 |
ttctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttctatatt |
116 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||| || || ||||| || || |
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|
| T |
9200764 |
ttctatttgtcgcgatttcttctctatacttgacataccaaaaaaggaaactcatcaaactcaagcaaaaattctttcaaaaaaatggtggttccatttt |
9200665 |
T |
|
| Q |
117 |
gctacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagctta |
216 |
Q |
| |
|
| |||| || ||||| ||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||| |
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|
| T |
9200664 |
ggtacagcaactatctacaagagaagacacttctcaagcagcacaaatattcacagaagaggaacttaagaaagccaccaaaaaatacgacgaaagctta |
9200565 |
T |
|
| Q |
217 |
atcatcggcagaggaggttttggtacagtttac |
249 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
9200564 |
atcatcggtagaggaggttttggtacagtttac |
9200532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 9118078 - 9118307
Alignment:
| Q |
14 |
ttattctatttgtggcgatttcagttctatacttgacgtaccaaaaaaggaaattaatcaaactaaagcaaaaattctttcaaaataacggaggttctat |
113 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||||||| | || || |||| || |
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|
| T |
9118078 |
ttattctatttgtggggatttcatctctatacttgatataccaaaaaagaaaactcatcaaactaaaacaaaaattctttcaacaaaatggtggtttcat |
9118177 |
T |
|
| Q |
114 |
attgctacaacagctatcaacaagagaagatacttcacaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagc |
213 |
Q |
| |
|
||||||||| | || | ||||||||||| || || ||||||||||| |||||||||||| ||||||| || ||||| ||||| | |||||| || ||| |
|
|
| T |
9118178 |
tttgctacaaaaactctttacaagagaagacacgtctcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagctacgacgaaagc |
9118277 |
T |
|
| Q |
214 |
ttaatcatcggcagaggaggttttggtaca |
243 |
Q |
| |
|
|||||||| || ||||||||||| |||||| |
|
|
| T |
9118278 |
ttaatcattggaagaggaggtttcggtaca |
9118307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 1816407 - 1816316
Alignment:
| Q |
156 |
agctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttt |
247 |
Q |
| |
|
|||||| || |||| |||| | ||||||| |||||| || || |||| ||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
1816407 |
agctcacattttcaaagaaaatgaactaaggaaagctactaacaactttgatgagagcttaatcataggtagaggaggttttggtacagttt |
1816316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 9230024 - 9229933
Alignment:
| Q |
158 |
ctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagtttac |
249 |
Q |
| |
|
||||||| |||| |||||| ||||| |||||||| ||||| ||||| || || || ||||| || |||||||||||||| ||||| |||||| |
|
|
| T |
9230024 |
ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttac |
9229933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 1856659 - 1856730
Alignment:
| Q |
178 |
gaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagtttac |
249 |
Q |
| |
|
||||||| ||||||||| || || | ||||| ||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
1856659 |
gaactaaggaaagccactaacaaatttgatgagagcttaatcataggtaaaggaggttttggtacagtttac |
1856730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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