View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16045_low_16 (Length: 203)
Name: NF16045_low_16
Description: NF16045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16045_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 33586972 - 33587143
Alignment:
| Q |
18 |
agtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattagaccatgttttttgctttcta |
117 |
Q |
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| T |
33586972 |
agtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattagaccatgttttttgctttcta |
33587071 |
T |
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| Q |
118 |
aagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaatta |
189 |
Q |
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| T |
33587072 |
aagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaatta |
33587143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 33594144 - 33594315
Alignment:
| Q |
18 |
agtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattagaccatgttttttgctttcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594144 |
agtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattagaccatgttttttgctttcta |
33594243 |
T |
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| Q |
118 |
aagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaatta |
189 |
Q |
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| T |
33594244 |
aagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaatta |
33594315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 33601275 - 33601446
Alignment:
| Q |
18 |
agtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnnncattataaagtatccaattagaccatgttttttgctttcta |
117 |
Q |
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|
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| T |
33601275 |
agtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttttcattataaagtatccaattagaccatgttttttgctttcta |
33601374 |
T |
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| Q |
118 |
aagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgatcatataactcgagaatta |
189 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601375 |
aagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcatataactcgagaatta |
33601446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 33561739 - 33561780
Alignment:
| Q |
18 |
agtggactcatttttggatatgacattgggatttcaggtttt |
59 |
Q |
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| T |
33561739 |
agtggactcatttttggatatgaccttggaatttcaggtttt |
33561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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